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Title :   CRYSTAL STRUCTURE OF SELENOPROTEIN W-RELATED PROTEIN FROM VIBRIO CHOLERAE. NORTHEAST STRUCTURAL GENOMICS TARGET VCR75

Authors :   J. Benach, H. Neely, J. Seetharaman, C. K. Ho, H. Janjua, K. Cunningham, L. Ma, R. Xiao, J. Liu, M. C. Baran, T. B. Acton, B. Rost, G. T. Montelione J. F. Hunt, L. Tong, Northeast Structural Genomics Consortium (Nesg)

Date :   28 Feb 07 (Deposition) - 20 Mar 07 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.30

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   Vcr75, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Benach, H. Neely, J. Seetharaman, C. K. Ho, H. Janjua, K. Cunningham, L. Ma, R. Xiao, J. Liu, M. C. Baran, T. B. Acton, B. Rost, G. T. Montelione, J. F. Hunt, L. Tong, Northeast Structural Genomics Consortium (Nesg)
Crystal Structure Of Selenoprotein W-Related Protein From Vibrio Cholerae.
To Be Published
PubMed: search
(for further references see the PDB file header)

Molecule 1 - SELENOPROTEIN W-RELATED PROTEIN
	Atcc	:	39315
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET21
	Expression System Strain	:	BL21(DE3)+MAGIC
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	VC0982
	Organism Scientific	:	VIBRIO CHOLERAE
	Organism Taxid	:	666
	Strain	:	EL TOR INABA N16961

		1	2	3	4
Asymmetric/Biological Unit	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 4)

No.	Name	Count	Type	Full Name
1	MSE	4	Mod. Amino Acid	SELENOMETHIONINE

(no "Site" information available for 2P0G)

Asymmetric/Biological Unit

No.	Residues
1	A:11	-	A:14
2	B:11	-	B:14
3	C:11	-	C:14
4	D:11	-	D:14

(no "Cis Peptide Bond" information available for 2P0G)

(no "SAP(SNP)/Variant" information available for 2P0G)

(no "PROSITE Motif" information available for 2P0G)

(no "Exon" information available for 2P0G)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:78
 aligned with Q9KTC1_VIBCH | Q9KTC1 from UniProtKB/TrEMBL  Length:97

    Alignment length:78
                                    12        22        32        42        52        62        72        
          Q9KTC1_VIBCH    3 KAQIEIYYCRQCNWMLRSAWLSQELLHTFSEEIEYVALHPDTGGRFEIFCNGVQIWERKQEGGFPEAKVLKQRVRDLI 80
               SCOP domains d2p0ga_ A: automated matches                                                   SCOP domains
               CATH domains 2p0gA00 A:3-80 Glutaredoxin                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeee....hhhhhhhhhhhhhhhh...eeeeeeeee....eeeee..eeeeehhhhh...hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------ Transcript
                  2p0g A  3 KAQIEIYYCRQCNWmLRSAWLSQELLHTFSEEIEYVALHPDTGGRFEIFCNGVQIWERKQEGGFPEAKVLKQRVRDLI 80
                                    12    |   22        32        42        52        62        72        
                                         17-MSE

Chain B from PDB  Type:PROTEIN  Length:80
 aligned with Q9KTC1_VIBCH | Q9KTC1 from UniProtKB/TrEMBL  Length:97

    Alignment length:80
                                    11        21        31        41        51        61        71        81
          Q9KTC1_VIBCH    2 NKAQIEIYYCRQCNWMLRSAWLSQELLHTFSEEIEYVALHPDTGGRFEIFCNGVQIWERKQEGGFPEAKVLKQRVRDLID 81
               SCOP domains d2p0gb_ B: automated matches                                                     SCOP domains
               CATH domains 2p0gB00 B:2-81 Glutaredoxin                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee....hhhhhhhhhhhhhhhh...eeeeeeeee....eeeee..eeeeehhhhh...hhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------- Transcript
                  2p0g B  2 NKAQIEIYYCRQCNWmLRSAWLSQELLHTFSEEIEYVALHPDTGGRFEIFCNGVQIWERKQEGGFPEAKVLKQRVRDLID 81
                                    11     |  21        31        41        51        61        71        81
                                          17-MSE

Chain C from PDB  Type:PROTEIN  Length:80
 aligned with Q9KTC1_VIBCH | Q9KTC1 from UniProtKB/TrEMBL  Length:97

    Alignment length:80
                                    11        21        31        41        51        61        71        81
          Q9KTC1_VIBCH    2 NKAQIEIYYCRQCNWMLRSAWLSQELLHTFSEEIEYVALHPDTGGRFEIFCNGVQIWERKQEGGFPEAKVLKQRVRDLID 81
               SCOP domains d2p0gc_ C: automated matches                                                     SCOP domains
               CATH domains 2p0gC00 C:2-81 Glutaredoxin                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee....hhhhhhhhhhhhhhhh...eeeeeeeee....eeeee..eeeeehhhhh...hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------- Transcript
                  2p0g C  2 NKAQIEIYYCRQCNWmLRSAWLSQELLHTFSEEIEYVALHPDTGGRFEIFCNGVQIWERKQEGGFPEAKVLKQRVRDLID 81
                                    11     |  21        31        41        51        61        71        81
                                          17-MSE

Chain D from PDB  Type:PROTEIN  Length:80
 aligned with Q9KTC1_VIBCH | Q9KTC1 from UniProtKB/TrEMBL  Length:97

    Alignment length:80
                                    12        22        32        42        52        62        72        82
          Q9KTC1_VIBCH    3 KAQIEIYYCRQCNWMLRSAWLSQELLHTFSEEIEYVALHPDTGGRFEIFCNGVQIWERKQEGGFPEAKVLKQRVRDLIDP 82
               SCOP domains d2p0gd_ D: automated matches                                                     SCOP domains
               CATH domains 2p0gD00 D:3-82 Glutaredoxin                                                      CATH domains
           Pfam domains (1) -Rdx-2p0gD01 D:4-79                                                          --- Pfam domains (1)
           Pfam domains (2) -Rdx-2p0gD02 D:4-79                                                          --- Pfam domains (2)
           Pfam domains (3) -Rdx-2p0gD03 D:4-79                                                          --- Pfam domains (3)
           Pfam domains (4) -Rdx-2p0gD04 D:4-79                                                          --- Pfam domains (4)
         Sec.struct. author .eeeeeeee....hhhhhhhhhhhhhhhh...eeeeeeeee....eeeee..eeeeehhhhh...hhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------- Transcript
                  2p0g D  3 KAQIEIYYCRQCNWmLRSAWLSQELLHTFSEEIEYVALHPDTGGRFEIFCNGVQIWERKQEGGFPEAKVLKQRVRDLIDP 82
                                    12    |   22        32        42        52        62        72        82
                                         17-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Thioredoxin fold (994)

Superfamily: Thioredoxin-like (992)

Family: Selenoprotein W-related (7)

Protein domain: automated matches (4)

Vibrio cholerae [TaxId: 666] (1)

1a	d2p0ga_	A:
1b	d2p0gb_	B:
1c	d2p0gc_	C:
1d	d2p0gd_	D:

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Glutaredoxin (620)

Homologous Superfamily: Glutaredoxin (617)

Vibrio cholerae. Organism_taxid: 666. Strain: el tor inaba n16961. (1)

1a	2p0gB00	B:2-81
1b	2p0gC00	C:2-81
1c	2p0gD00	D:3-82
1d	2p0gA00	A:3-80

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: Rdx] (5)

Family: Rdx (5)

Vibrio cholerae (1)

1a	Rdx-2p0gD01	D:4-79
1b	Rdx-2p0gD02	D:4-79
1c	Rdx-2p0gD03	D:4-79
1d	Rdx-2p0gD04	D:4-79

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D (Q9KTC1_VIBCH | Q9KTC1)

molecular function
	GO:0003674	molecular_function	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
biological process
	GO:0008150	biological_process	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
cellular component
	GO:0005575	cellular_component	The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.

Asymmetric/Biological Unit
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