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(-) Description

Title :  CRYSTAL STRUCTURE OF AN UNKNOWN CONSERVED PROTEIN- PFAM: UPF0223
 
Authors :  R. Sugadev, S. K. Burley, S. Swaminathan, New York Sgx Research Center For Structural Genomics (Nysgxrc)
Date :  21 Feb 07  (Deposition) - 20 Mar 07  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Pfam, Upf0223, 10286B, Structural Genomics, Psi-2, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Sugadev, S. K. Burley, S. Swaminathan
Crystal Structure Of An Unknown Conserved Protein - Pfam: Upf0223
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - UPF0223 PROTEIN BH2638
    Atcc: BAA-125
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PSGX3
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: BH2638
    Organism Scientific: BACILLUS HALODURANS C-125
    Organism Taxid: 272558
    Strain: C-125, DSM 18197, FERM 7344, JCM 9153

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric/Biological Unit (2, 5)
No.NameCountTypeFull Name
1MG1Ligand/IonMAGNESIUM ION
2MSE4Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH B:428 , HOH B:433 , HOH B:455 , HOH B:459 , HOH B:460 , HOH B:461BINDING SITE FOR RESIDUE MG B 400

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2OY9)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2OY9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2OY9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2OY9)

(-) Exons   (0, 0)

(no "Exon" information available for 2OY9)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:85
 aligned with Y2638_BACHD | Q9K9K7 from UniProtKB/Swiss-Prot  Length:88

    Alignment length:85
                                    13        23        33        43        53        63        73        83     
           Y2638_BACHD    4 TLPISLDWSTEEVIDVVHFFQAIEQAYDQGIAREDLLGKYRRFKEIVPSKSEEKQLFRAYEQENDVSCYQTIKKAREEMEEHIQM 88
               SCOP domains d2oy9a1 A:6-90 Uncharacterized protein BH2638                                         SCOP domains
               CATH domains --------2oy9A01 A:14-89 BH2638-like domains                                         - CATH domains
               Pfam domains ------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhhhh..eehhhhhhhhhhhhhhh.hhhhhhhhhhhhhh....hhhhhhhhhhhh...ee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------- Transcript
                  2oy9 A  6 TLPISLDWSTEEVIDVVHFFQAIEQAYDQGIAREDLLGKYRRFKEIVPSKSEEKQLFRAYEQENDVSCYQTIKKAREEmEEHIQm 90
                                    15        25        35        45        55        65        75        85    |
                                                                                                         84-MSE |
                                                                                                               90-MSE


Chain B from PDB  Type:PROTEIN  Length:82
 aligned with Y2638_BACHD | Q9K9K7 from UniProtKB/Swiss-Prot  Length:88

    Alignment length:82
                                    16        26        36        46        56        66        76        86  
           Y2638_BACHD    7 ISLDWSTEEVIDVVHFFQAIEQAYDQGIAREDLLGKYRRFKEIVPSKSEEKQLFRAYEQENDVSCYQTIKKAREEMEEHIQM 88
               SCOP domains d2oy9b_ B: Uncharacterized protein BH2638                                          SCOP domains
               CATH domains -----2oy9B01 B:14-89 BH2638-like domains                                         - CATH domains
           Pfam domains (1) UPF0223-2oy9B01 B:9-90                                                             Pfam domains (1)
           Pfam domains (2) UPF0223-2oy9B02 B:9-90                                                             Pfam domains (2)
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhh..eehhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhh...ee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------- Transcript
                  2oy9 B  9 ISLDWSTEEVIDVVHFFQAIEQAYDQGIAREDLLGKYRRFKEIVPSKSEEKQLFRAYEQENDVSCYQTIKKAREEmEEHIQm 90
                                    18        28        38        48        58        68        78     |  88 |
                                                                                                      84-MSE |
                                                                                                            90-MSE
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: UPF0223] (1)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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