Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym.Unit - manually
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
(-)Biological Unit 4
collapse expand < >
Image Asym.Unit - manually
Asym.Unit - manually  (Jmol Viewer)
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)
Image Biological Unit 4
Biological Unit 4  (Jmol Viewer)

(-) Description

Title :  THE SOXYZ COMPLEX OF PARACOCCUS PANTOTROPHUS
 
Authors :  S. Bruno, V. Sauve, B. C. Berks, A. M. Hemmings
Date :  19 Feb 07  (Deposition) - 22 May 07  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.98
Chains :  Asym. Unit :  A,B,C,D,E,F,Y,Z
Biol. Unit 1:  Y,Z  (1x)
Biol. Unit 2:  A,B  (1x)
Biol. Unit 3:  C,D  (1x)
Biol. Unit 4:  E,F  (1x)
Keywords :  Immunoglobulin-Like Beta-Sandwich Fold, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Sauve, S. Bruno, B. C. Berks, A. M. Hemmings
The Soxyz Complex Carries Sulfur Cycle Intermediates On A Peptide Swinging Arm.
J. Biol. Chem. V. 282 23194 2007
PubMed-ID: 17522046  |  Reference-DOI: 10.1074/JBC.M701602200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - SOXZ PROTEIN
    Chains: Z, A, C, E
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PVS005
    Expression System Strain: B834
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: SOXZ
    Organism Scientific: PARACOCCUS DENITRIFICANS
    Organism Taxid: 266
    Strain: LMD82.5T
 
Molecule 2 - SOXY PROTEIN
    Chains: Y, B, D, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PVS005
    Expression System Strain: B834
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: SOXY
    Organism Scientific: PARACOCCUS DENITRIFICANS
    Organism Taxid: 266
    Strain: LMD82.5T

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFYZ
Biological Unit 1 (1x):       YZ
Biological Unit 2 (1x): AB      
Biological Unit 3 (1x):   CD    
Biological Unit 4 (1x):     EF  

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 28)

Asymmetric Unit (5, 28)
No.NameCountTypeFull Name
1ACT8Ligand/IonACETATE ION
2CME4Mod. Amino AcidS,S-(2-HYDROXYETHYL)THIOCYSTEINE
3EDO1Ligand/Ion1,2-ETHANEDIOL
4MSE12Mod. Amino AcidSELENOMETHIONINE
5SO43Ligand/IonSULFATE ION
Biological Unit 1 (4, 7)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2CME1Mod. Amino AcidS,S-(2-HYDROXYETHYL)THIOCYSTEINE
3EDO-1Ligand/Ion1,2-ETHANEDIOL
4MSE3Mod. Amino AcidSELENOMETHIONINE
5SO41Ligand/IonSULFATE ION
Biological Unit 2 (4, 11)
No.NameCountTypeFull Name
1ACT5Ligand/IonACETATE ION
2CME1Mod. Amino AcidS,S-(2-HYDROXYETHYL)THIOCYSTEINE
3EDO-1Ligand/Ion1,2-ETHANEDIOL
4MSE3Mod. Amino AcidSELENOMETHIONINE
5SO42Ligand/IonSULFATE ION
Biological Unit 3 (2, 4)
No.NameCountTypeFull Name
1ACT-1Ligand/IonACETATE ION
2CME1Mod. Amino AcidS,S-(2-HYDROXYETHYL)THIOCYSTEINE
3EDO-1Ligand/Ion1,2-ETHANEDIOL
4MSE3Mod. Amino AcidSELENOMETHIONINE
5SO4-1Ligand/IonSULFATE ION
Biological Unit 4 (4, 6)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2CME1Mod. Amino AcidS,S-(2-HYDROXYETHYL)THIOCYSTEINE
3EDO1Ligand/Ion1,2-ETHANEDIOL
4MSE3Mod. Amino AcidSELENOMETHIONINE
5SO4-1Ligand/IonSULFATE ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREPRO B:66 , HOH B:970 , LYS Z:5 , PRO Z:6 , ARG Z:7 , ACT Z:902BINDING SITE FOR RESIDUE ACT Z 901
02AC2SOFTWAREPRO Z:6 , ARG Z:7 , VAL Z:8 , ASP Z:101 , LYS Z:103 , ACT Z:901 , HOH Z:970BINDING SITE FOR RESIDUE ACT Z 902
03AC3SOFTWAREGLY B:17 , SER B:95 , VAL B:97 , THR D:82 , ASP D:84 , HOH D:212BINDING SITE FOR RESIDUE ACT B 903
04AC4SOFTWARELEU B:21 , THR B:22 , LEU B:23BINDING SITE FOR RESIDUE ACT B 904
05AC5SOFTWAREGLU B:38 , HOH B:984 , HOH B:995BINDING SITE FOR RESIDUE ACT B 905
06AC6SOFTWAREGLU B:27 , ILE B:28BINDING SITE FOR RESIDUE ACT B 906
07AC7SOFTWARESER E:32 , GLN E:34 , CME F:110BINDING SITE FOR RESIDUE ACT E 907
08AC8SOFTWAREARG A:7 , LYS A:9 , LYS A:23 , TYR A:74 , HOH A:941BINDING SITE FOR RESIDUE ACT A 908
09AC9SOFTWARELYS C:15 , GLY D:200 , SER Y:1 , THR Y:2 , HOH Y:914BINDING SITE FOR RESIDUE SO4 Y 910
10BC1SOFTWAREALA A:1 , ASP A:2 , LYS A:29 , HOH A:940 , HOH A:966 , HOH A:995 , HOH A:1036 , THR Y:22 , HOH Y:936BINDING SITE FOR RESIDUE SO4 A 911
11BC2SOFTWAREALA B:15 , THR B:16 , LYS B:98 , HOH B:966 , HOH B:967BINDING SITE FOR RESIDUE SO4 B 912
12BC3SOFTWARETHR F:2 , VAL F:3 , ASP F:4 , HOH F:923 , HOH F:941 , HOH F:1005BINDING SITE FOR RESIDUE EDO F 909

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2OX5)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2OX5)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2OX5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2OX5)

(-) Exons   (0, 0)

(no "Exon" information available for 2OX5)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:108
 aligned with Q9LCU8_PARDE | Q9LCU8 from UniProtKB/TrEMBL  Length:109

    Alignment length:108
                                    11        21        31        41        51        61        71        81        91       101        
         Q9LCU8_PARDE     2 ADDAKPRVKVPSSAKAGETVTVKALISHKMESGQRKDADGKLIPRSIINRFTCELNGVNVVDVAIDPAVSTNPYFEFDAKVDAAGEFKFTWYDDDGSVYEDVKPIAVA 109
               SCOP domains d2ox5a_ A: automated matches                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeee...ee...eeeeeeeee.....................eeeeeeee..eeeeeeee........eeeeeeee...eeeeeeeee....eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 2ox5 A   1 ADDAKPRVKVPSSAKAGETVTVKALISHKmESGQRKDADGKLIPRSIINRFTCELNGVNVVDVAIDPAVSTNPYFEFDAKVDAAGEFKFTWYDDDGSVYEDVKPIAVA 108
                                    10        20        30        40        50        60        70        80        90       100        
                                                        30-MSE                                                                          


Chain B from PDB  Type:PROTEIN  Length:111
 aligned with Q9LCU9_PARDE | Q9LCU9 from UniProtKB/TrEMBL  Length:140

    Alignment length:135
                                    13        23        33        43        53        63        73        83        93       103       113       123       133     
         Q9LCU9_PARDE     4 SRREALWIGFGGLAAAALPGKAVMASTVDELTAAFTGGAATGEGGLTLTAPEIAENGNTVPIEVKAPGAVAIMLLAAGNPEPAVATFNFGPAAADQRAATRIRLAQTQDVIALAKMADGSVVKAQTTVKVTIGGC 138
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .------------------------hhhhhhhhhhhh.........eee...eeee...eeeeee.....eeeeee......eeeeeee...eeeeeeeeee.....eeeeeeee.....eeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ox5 B 203 S------------------------STVDELTAAFTGGAATGEGGLTLTAPEIAENGNTVPIEVKAPGAVAImLLAAGNPEPAVATFNFGPAAADQRAATRIRLAQTQDVIALAKmADGSVVKAQTTVKVTIGGc 110
                            |        -         -     |   5        15        25        35        45  |     55        65        75        85     |  95       105    |
                          203                        1                                             48-MSE                                     91-MSE            110-CME


Chain C from PDB  Type:PROTEIN  Length:103
 aligned with Q9LCU8_PARDE | Q9LCU8 from UniProtKB/TrEMBL  Length:109

    Alignment length:108
                                    11        21        31        41        51        61        71        81        91       101        
         Q9LCU8_PARDE     2 ADDAKPRVKVPSSAKAGETVTVKALISHKMESGQRKDADGKLIPRSIINRFTCELNGVNVVDVAIDPAVSTNPYFEFDAKVDAAGEFKFTWYDDDGSVYEDVKPIAVA 109
               SCOP domains d2ox5c_ C: automated matches                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeee........eeeeeeeee..........-----......eeeeeeee..eeeeeeee........eeeeeeee...eeeeeeeee....eeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 2ox5 C   1 ADDAKPRVKVPSSAKAGETVTVKALISHKmESGQRK-----LIPRSIINRFTCELNGVNVVDVAIDPAVSTNPYFEFDAKVDAAGEFKFTWYDDDGSVYEDVKPIAVA 108
                                    10        20        30     |   - |      50        60        70        80        90       100        
                                                        30-MSE36    42                                                                  


Chain D from PDB  Type:PROTEIN  Length:113
 aligned with Q9LCU9_PARDE | Q9LCU9 from UniProtKB/TrEMBL  Length:140

    Alignment length:117
                                    32        42        52        62        72        82        92       102       112       122       132       
         Q9LCU9_PARDE    23 GKAVMASTVDELTAAFTGGAATGEGGLTLTAPEIAENGNTVPIEVKAPGAVAIMLLAAGNPEPAVATFNFGPAAADQRAATRIRLAQTQDVIALAKMADGSVVKAQTTVKVTIGGCG 139
               SCOP domains --------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..----.hhhhhhhhhhh.........eee...eeee...eeeeee...eeeeeeee......eeeeeee...eeeeeeeeee.....eeeeeeeee....eeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 2ox5 D 200 GS----STVDELTAAFTGGAATGEGGLTLTAPEIAENGNTVPIEVKAPGAVAImLLAAGNPEPAVATFNFGPAAADQRAATRIRLAQTQDVIALAKmADGSVVKAQTTVKVTIGGcG 111
                             |    |  4        14        24        34        44   |    54        64        74        84      | 94       104     | 
                             |    1                                             48-MSE                                     91-MSE            110-CME
                           201                                                                                                                   


Chain E from PDB  Type:PROTEIN  Length:101
 aligned with Q9LCU8_PARDE | Q9LCU8 from UniProtKB/TrEMBL  Length:109

    Alignment length:108
                                    11        21        31        41        51        61        71        81        91       101        
         Q9LCU8_PARDE     2 ADDAKPRVKVPSSAKAGETVTVKALISHKMESGQRKDADGKLIPRSIINRFTCELNGVNVVDVAIDPAVSTNPYFEFDAKVDAAGEFKFTWYDDDGSVYEDVKPIAVA 109
               SCOP domains d2ox5e_ E: automated matches                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eee........eeeeeeee.........-------......eeeeeeee..eeeeeeee........eeeeeeee...eeeeeeeee....eeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 2ox5 E   1 ADDAKPRVKVPSSAKAGETVTVKALISHKmESGQ-------LIPRSIINRFTCELNGVNVVDVAIDPAVSTNPYFEFDAKVDAAGEFKFTWYDDDGSVYEDVKPIAVA 108
                                    10        20        30   |     - |      50        60        70        80        90       100        
                                                        30-MSE      42                                                                  


Chain F from PDB  Type:PROTEIN  Length:113
 aligned with Q9LCU9_PARDE | Q9LCU9 from UniProtKB/TrEMBL  Length:140

    Alignment length:126
                                    22        32        42        52        62        72        82        92       102       112       122       132      
         Q9LCU9_PARDE    13 FGGLAAAALPGKAVMASTVDELTAAFTGGAATGEGGLTLTAPEIAENGNTVPIEVKAPGAVAIMLLAAGNPEPAVATFNFGPAAADQRAATRIRLAQTQDVIALAKMADGSVVKAQTTVKVTIGGC 138
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...-------------.hhhhhhhhhhh....ee...eee...eeee...eeeeee.....eeeeee......eeeeeee...eeeeeeeeee.....eeeeeeee.....eeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2ox5 F 200 HGS-------------STVDELTAAFTGGAATGEGGLTLTAPEIAENGNTVPIEVKAPGAVAImLLAAGNPEPAVATFNFGPAAADQRAATRIRLAQTQDVIALAKmADGSVVKAQTTVKVTIGGc 110
                              |      -      |  4        14        24        34        44   |    54        64        74        84      | 94       104     |
                            202             1                                             48-MSE                                     91-MSE            110-CME


Chain Y from PDB  Type:PROTEIN  Length:113
 aligned with Q9LCU9_PARDE | Q9LCU9 from UniProtKB/TrEMBL  Length:140

    Alignment length:137
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       
         Q9LCU9_PARDE     4 SRREALWIGFGGLAAAALPGKAVMASTVDELTAAFTGGAATGEGGLTLTAPEIAENGNTVPIEVKAPGAVAIMLLAAGNPEPAVATFNFGPAAADQRAATRIRLAQTQDVIALAKMADGSVVKAQTTVKVTIGGCGG 140
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -----------------------------SoxY-2ox5Y01 Y:5-110                                                                                      -- Pfam domains (1)
           Pfam domains (2) -----------------------------SoxY-2ox5Y02 Y:5-110                                                                                      -- Pfam domains (2)
           Pfam domains (3) -----------------------------SoxY-2ox5Y03 Y:5-110                                                                                      -- Pfam domains (3)
           Pfam domains (4) -----------------------------SoxY-2ox5Y04 Y:5-110                                                                                      -- Pfam domains (4)
         Sec.struct. author .------------------------hhhhhhhhhhhh.........eee...eeee...eeeeee...eeeeeeee......eeeeeee...eeeeeeeeee.....eeeeeeeee....eeeeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ox5 Y 201 S------------------------STVDELTAAFTGGAATGEGGLTLTAPEIAENGNTVPIEVKAPGAVAImLLAAGNPEPAVATFNFGPAAADQRAATRIRLAQTQDVIALAKmADGSVVKAQTTVKVTIGGcGG 112
                            |        -         -     |   5        15        25        35        45  |     55        65        75        85     |  95       105    |  
                            |                        1                                             48-MSE                                     91-MSE            110-CME
                          201                                                                                                                                        


Chain Z from PDB  Type:PROTEIN  Length:108
 aligned with Q9LCU8_PARDE | Q9LCU8 from UniProtKB/TrEMBL  Length:109

    Alignment length:108
                                    11        21        31        41        51        61        71        81        91       101        
         Q9LCU8_PARDE     2 ADDAKPRVKVPSSAKAGETVTVKALISHKMESGQRKDADGKLIPRSIINRFTCELNGVNVVDVAIDPAVSTNPYFEFDAKVDAAGEFKFTWYDDDGSVYEDVKPIAVA 109
               SCOP domains d2ox5z_ Z: automated matches                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) -----SoxZ-2ox5Z01 Z:6-105                                                                                --- Pfam domains (1)
           Pfam domains (2) -----SoxZ-2ox5Z02 Z:6-105                                                                                --- Pfam domains (2)
           Pfam domains (3) -----SoxZ-2ox5Z03 Z:6-105                                                                                --- Pfam domains (3)
           Pfam domains (4) -----SoxZ-2ox5Z04 Z:6-105                                                                                --- Pfam domains (4)
         Sec.struct. author .....eeee...ee...eeeeeeeee.....................eeeeeeee..eeeeeeee........eeeeeeee...eeeeeeeee....eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 2ox5 Z   1 ADDAKPRVKVPSSAKAGETVTVKALISHKmESGQRKDADGKLIPRSIINRFTCELNGVNVVDVAIDPAVSTNPYFEFDAKVDAAGEFKFTWYDDDGSVYEDVKPIAVA 108
                                    10        20        30        40        50        60        70        80        90       100        
                                                        30-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2OX5)

(-) Pfam Domains  (2, 8)

Asymmetric Unit
(-)
Clan: E-set (290)
(-)
Clan: SOR (12)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2OX5)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    ACT  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    CME  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    EDO  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MSE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2ox5)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]
    Biological Unit 4  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format | Biol. Unit 3 PNG format | Biol. Unit 4 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  2ox5
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  Q9LCU8_PARDE | Q9LCU8
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
  Q9LCU9_PARDE | Q9LCU9
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  Q9LCU8_PARDE | Q9LCU8
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  Q9LCU9_PARDE | Q9LCU9
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9LCU8_PARDE | Q9LCU8: 2oxg 2oxh
        Q9LCU9_PARDE | Q9LCU9: 2oxg 2oxh

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 2OX5)