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(-) Description

Title :  CRYSTAL STRUCTURE OF OLEOYL THIOESTERASE (PUTATIVE) (NP_784467.1) FROM LACTOBACILLUS PLANTARUM AT 2.00 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  16 Feb 07  (Deposition) - 27 Feb 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A,B  (2x)
Keywords :  Np_784467. 1, Oleoyl Thioesterase (Putative), Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Oleoyl Thioesterase (Putative) (Np_784467. 1) From Lactobacillus Plantarum At 2. 00 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE OLEOYL-[ACYL-CARRIER PROTEIN] THIOESTERASE
    Atcc: BAA-793
    Chains: A, B
    EC Number: 3.1.2.14
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: NP_784467.1, FAT, LP_0708
    Organism Scientific: LACTOBACILLUS PLANTARUM
    Organism Taxid: 1590
    Strain: NCIMB 8826, WCFS1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB
Biological Unit 2 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 26)

Asymmetric Unit (5, 26)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2GOL8Ligand/IonGLYCEROL
3MSE8Mod. Amino AcidSELENOMETHIONINE
4SO46Ligand/IonSULFATE ION
5UNL2Ligand/IonUNKNOWN LIGAND
Biological Unit 1 (5, 26)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2GOL8Ligand/IonGLYCEROL
3MSE8Mod. Amino AcidSELENOMETHIONINE
4SO46Ligand/IonSULFATE ION
5UNL2Ligand/IonUNKNOWN LIGAND
Biological Unit 2 (5, 52)
No.NameCountTypeFull Name
1ACT4Ligand/IonACETATE ION
2GOL16Ligand/IonGLYCEROL
3MSE16Mod. Amino AcidSELENOMETHIONINE
4SO412Ligand/IonSULFATE ION
5UNL4Ligand/IonUNKNOWN LIGAND

(-) Sites  (18, 18)

Asymmetric Unit (18, 18)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREPRO A:164 , TYR A:165 , HIS A:166 , ARG A:168 , HOH A:349 , HOH A:425 , PRO B:164 , TYR B:165 , HIS B:166 , ARG B:168 , HOH B:285 , HOH B:441BINDING SITE FOR RESIDUE SO4 A 262
02AC2SOFTWAREARG A:27 , ARG A:73 , ASP A:200 , ARG A:254 , ACT A:267 , HOH A:279 , HOH A:370 , HOH A:430 , HOH A:473BINDING SITE FOR RESIDUE SO4 A 263
03AC3SOFTWAREGLU A:155 , ARG B:147BINDING SITE FOR RESIDUE SO4 A 264
04AC4SOFTWAREGLN B:66 , ARG B:147 , ARG B:150 , ARG B:207 , ACT B:263 , HOH B:338 , HOH B:383BINDING SITE FOR RESIDUE SO4 B 262
05AC5SOFTWAREPRO A:92 , LYS A:128 , VAL A:142 , LYS A:143 , ARG A:144BINDING SITE FOR RESIDUE SO4 A 265
06AC6SOFTWAREGLN A:66 , LEU A:148 , ARG A:150 , HOH A:284BINDING SITE FOR RESIDUE SO4 A 266
07AC7SOFTWAREGLN B:66 , PHE B:94 , SO4 B:262 , HOH B:338BINDING SITE FOR RESIDUE ACT B 263
08AC8SOFTWARETHR A:25 , ARG A:27 , ARG A:76 , SO4 A:263 , HOH A:516BINDING SITE FOR RESIDUE ACT A 267
09AC9SOFTWARESER A:45 , TRP A:62 , GLY A:87 , ALA A:95 , ARG A:97 , TRP A:116 , TYR A:137 , HOH A:299 , HOH A:401 , HOH A:494 , HOH A:517BINDING SITE FOR RESIDUE UNL A 268
10BC1SOFTWARESER B:41 , SER B:45 , TRP B:62 , ARG B:97 , TRP B:116 , TYR B:137 , HOH B:354 , HOH B:394 , HOH B:462BINDING SITE FOR RESIDUE UNL B 264
11BC2SOFTWAREASN A:7 , TRP A:100 , GLN A:108 , GOL A:270 , HOH A:495 , HOH A:496 , HOH A:511BINDING SITE FOR RESIDUE GOL A 269
12BC3SOFTWAREALA A:6 , ASN A:7 , TRP A:100 , GLN A:108 , TYR A:111 , GOL A:269 , HOH A:495 , HOH A:496 , HOH A:511BINDING SITE FOR RESIDUE GOL A 270
13BC4SOFTWAREALA A:68 , ILE A:69 , ASP A:70 , TYR A:111 , THR A:113 , HIS A:203 , HOH A:360 , HOH A:426BINDING SITE FOR RESIDUE GOL A 271
14BC5SOFTWAREARG A:16 , TYR B:11 , GLU B:13 , ASP B:43 , HOH B:455BINDING SITE FOR RESIDUE GOL B 265
15BC6SOFTWAREGLN B:14 , VAL B:80BINDING SITE FOR RESIDUE GOL B 266
16BC7SOFTWARESER A:12 , GLU A:13 , GLN A:14 , HOH A:405BINDING SITE FOR RESIDUE GOL A 272
17BC8SOFTWARETYR A:208 , GLU A:209 , ASN A:210BINDING SITE FOR RESIDUE GOL A 273
18BC9SOFTWARETRP B:100 , GLN B:108 , TYR B:111BINDING SITE FOR RESIDUE GOL B 267

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2OWN)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2OWN)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2OWN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2OWN)

(-) Exons   (0, 0)

(no "Exon" information available for 2OWN)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:256
 aligned with F9ULU3_LACPL | F9ULU3 from UniProtKB/TrEMBL  Length:261

    Alignment length:256
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252      
         F9ULU3_LACPL     3 TLGANASLYSEQHRITYYECDRTGRATLTTLIDIAVLASEDQSDALGLTTEMVQSHGVGWVVTQYAIDITRMPRQDEVVTIAVRGSAYNPYFAYREFWIRDADGQQLAYITSIWVMMSQTTRRIVKILPELVAPYQSEVVKRIPRLPRPISFEATDTTITKPYHVRFFDIDPNRHVNNAHYFDWLVDTLPATFLLQHDLVHVDVRYENEVKYGQTVTAHANILPSEVADQVTTSHLIEVDDEKCCEVTIQWRTLPE 258
               SCOP domains d2owna1 A:3-149 Putative oleoyl-ACP thioesterase LP0708                                                                                            d2owna2 A:150-258 Putative oleoyl-ACP thioesterase LP0708                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeeee.hhhhh......hhhhhhhhhhhhhhhhhhhh..hhhhhhh..eeeeeeeeeeee........eeeeeeeeeee....eeeeeeee.....eeeeeeeeeeeee.....ee..hhhhhhhhh.ee...................eeeeee.hhhhh......hhhhhhhhhhhhhhhhhhhheeeeeeeeee........eeeeeeeee......eeeeeeeeee..eeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2own A   3 TLGANASLYSEQHRITYYECDRTGRATLTTLIDIAVLASEDQSDALGLTTEmVQSHGVGWVVTQYAIDITRmPRQDEVVTIAVRGSAYNPYFAYREFWIRDADGQQLAYITSIWVmmSQTTRRIVKILPELVAPYQSEVVKRIPRLPRPISFEATDTTITKPYHVRFFDIDPNRHVNNAHYFDWLVDTLPATFLLQHDLVHVDVRYENEVKYGQTVTAHANILPSEVADQVTTSHLIEVDDEKCCEVTIQWRTLPE 258
                                    12        22        32        42        52 |      62        72 |      82        92       102       112     ||122       132       142       152       162       172       182       192       202       212       222       232       242       252      
                                                                              54-MSE              74-MSE                                     118-MSE                                                                                                                                        
                                                                                                                                              119-MSE                                                                                                                                       


Chain B from PDB  Type:PROTEIN  Length:258
 aligned with F9ULU3_LACPL | F9ULU3 from UniProtKB/TrEMBL  Length:261

    Alignment length:259
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252         
         F9ULU3_LACPL     3 TLGANASLYSEQHRITYYECDRTGRATLTTLIDIAVLASEDQSDALGLTTEMVQSHGVGWVVTQYAIDITRMPRQDEVVTIAVRGSAYNPYFAYREFWIRDADGQQLAYITSIWVMMSQTTRRIVKILPELVAPYQSEVVKRIPRLPRPISFEATDTTITKPYHVRFFDIDPNRHVNNAHYFDWLVDTLPATFLLQHDLVHVDVRYENEVKYGQTVTAHANILPSEVADQVTTSHLIEVDDEKCCEVTIQWRTLPEPIQ 261
               SCOP domains d2ownb1 B:3-149 Putative oleoyl-ACP thioesterase LP0708                                                                                            d2ownb2 B:150-261 Putative oleoyl-ACP thioesterase LP0708                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeeee.hhhhh......hhhhhhhhhhhhhhhhhhhh..hhhhhhhh.eeeeeeeeeeee........eeeeeeeeeee...eeeeeeeee.....eeeeeeeeeeeee.....ee..hhhhhhhhh.ee.-.................eeeeee.hhh.ee...ee...hhhhhhhhhhhhhhhh.eeeeeeeeee........eeeeeeeeee.....eeeeeeeee....eeeeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2own B   3 TLGANASLYSEQHRITYYECDRTGRATLTTLIDIAVLASEDQSDALGLTTEmVQSHGVGWVVTQYAIDITRmPRQDEVVTIAVRGSAYNPYFAYREFWIRDADGQQLAYITSIWVmmSQTTRRIVKILPELVAPYQSEVV-RIPRLPRPISFEATDTTITKPYHVRFFDIDPNRHVNNAHYFDWLVDTLPATFLLQHDLVHVDVRYENEVKYGQTVTAHANILPSEVADQVTTSHLIEVDDEKCCEVTIQWRTLPEPIQ 261
                                    12        22        32        42        52 |      62        72 |      82        92       102       112     ||122       132       142 |     152       162       172       182       192       202       212       222       232       242       252         
                                                                              54-MSE              74-MSE                                     118-MSE                 142 |                                                                                                                     
                                                                                                                                              119-MSE                  144
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2OWN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2OWN)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (F9ULU3_LACPL | F9ULU3)
molecular function
    GO:0016297    acyl-[acyl-carrier-protein] hydrolase activity    Catalysis of the reaction: acyl-[acyl-carrier protein] + H2O = [acyl-carrier protein] + a fatty acid.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016295    myristoyl-[acyl-carrier-protein] hydrolase activity    Catalysis of the reaction: myristoyl-[acyl-carrier protein] + H2O = [acyl-carrier protein] + myristate.
    GO:0004320    oleoyl-[acyl-carrier-protein] hydrolase activity    Catalysis of the reaction: oleoyl-[acyl-carrier protein] + H2O = [acyl-carrier protein] + oleate.
    GO:0016296    palmitoyl-[acyl-carrier-protein] hydrolase activity    Catalysis of the reaction: palmitoyl-[acyl-carrier protein] + H2O = [acyl-carrier protein] + palmitate.
    GO:0016790    thiolester hydrolase activity    Catalysis of the reaction: RCO-SR' + H2O = RCOOH + HSR'. This reaction is the hydrolysis of a thiolester bond, an ester formed from a carboxylic acid and a thiol (i.e., RCO-SR'), such as that found in acetyl-coenzyme A.
biological process
    GO:0006633    fatty acid biosynthetic process    The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes.

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  2own
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