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(-) Description

Title :  CRYSTAL STRUCTURE OF THE HAT-C DOMAIN OF MURINE CSTF-77
 
Authors :  Y. Bai, T. C. Auperin, C. -Y. Chou, G. -G. Chang, J. L. Manley, L. Tong
Date :  23 Jan 07  (Deposition) - 10 Apr 07  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Hat Domain, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Bai, T. C. Auperin, C. Y. Chou, G. G. Chang, J. L. Manley, L. Tong
Crystal Structure Of Murine Cstf-77: Dimeric Association And Implications For Polyadenylation Of Mrna Precursors.
Mol. Cell V. 25 863 2007
PubMed-ID: 17386263  |  Reference-DOI: 10.1016/J.MOLCEL.2007.01.034
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CLEAVAGE STIMULATION FACTOR 77 KDA SUBUNIT
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: ROSETTA
    Expression System Taxid: 562
    Expression System Vector: PLASMID
    Expression System Vector Type: PET28A
    Fragment: RESIDUES 242-549
    Gene: CSTF3
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: CSTF 77 KDA SUBUNIT, CF-1 77 KDA SUBUNIT, CSTF-77

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 18)

Asymmetric/Biological Unit (1, 18)
No.NameCountTypeFull Name
1MSE18Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 2OND)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2OND)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2OND)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2OND)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2OND)

(-) Exons   (0, 0)

(no "Exon" information available for 2OND)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:308
 aligned with CSTF3_MOUSE | Q99LI7 from UniProtKB/Swiss-Prot  Length:717

    Alignment length:308
                                   251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541        
          CSTF3_MOUSE   242 TPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETALLVDRYKFMDLYPCSASELKALGYKDV 549
               SCOP domains d2onda1 A:242-549 Cleavage stimulation factor 77 kDa subunit CSTF3                                                                                                                                                                                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhh..........hhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ond A 242 TPQEAQQVDmWKKYIQWEKSNPLRTEDQTLITKRVmFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDmNNAKLFSDEAANIYERAISTLLKKNmLLYFAYADYEESRmKYEKVHSIYNRLLAIEDIDPTLVYIQYmKFARRAEGIKSGRmIFKKAREDARTRHHVYVTAALmEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETALLVDRYKFmDLYPCSASELKALGYKDV 549
                                   251       261       271     | 281       291       301       311  |    321       331       341       351  |    361       371       381|      391    |  401       411      |421       431       441       451       461       471       481       491       501       511       521       531       541        
                                   251-MSE                   277-MSE                              314-MSE                   340-MSE       354-MSE                     382-MSE       396-MSE               418-MSE                                                                                                          531-MSE              


Chain B from PDB  Type:PROTEIN  Length:308
 aligned with CSTF3_MOUSE | Q99LI7 from UniProtKB/Swiss-Prot  Length:717

    Alignment length:308
                                   251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541        
          CSTF3_MOUSE   242 TPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETALLVDRYKFMDLYPCSASELKALGYKDV 549
               SCOP domains d2ondb_ B: Cleavage stimulation factor 77 kDa subunit CSTF3                                                                                                                                                                                                                                                          SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -------------------------------------------------------------------------------------------------------------------------------------Suf-2ondB01 B:375-549                                                                                                                                                           Pfam domains (1)
           Pfam domains (2) -------------------------------------------------------------------------------------------------------------------------------------Suf-2ondB02 B:375-549                                                                                                                                                           Pfam domains (2)
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhh.......hhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ond B 242 TPQEAQQVDmWKKYIQWEKSNPLRTEDQTLITKRVmFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDmNNAKLFSDEAANIYERAISTLLKKNmLLYFAYADYEESRmKYEKVHSIYNRLLAIEDIDPTLVYIQYmKFARRAEGIKSGRmIFKKAREDARTRHHVYVTAALmEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETALLVDRYKFmDLYPCSASELKALGYKDV 549
                                   251       261       271     | 281       291       301       311  |    321       331       341       351  |    361       371       381|      391    |  401       411      |421       431       441       451       461       471       481       491       501       511       521       531       541        
                                   251-MSE                   277-MSE                              314-MSE                   340-MSE       354-MSE                     382-MSE       396-MSE               418-MSE                                                                                                          531-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2OND)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: TPR (230)
(-)
Family: Suf (4)
(-)
Mus musculus (Mouse) (2)
1aSuf-2ondB01B:375-549
1bSuf-2ondB02B:375-549

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (CSTF3_MOUSE | Q99LI7)
molecular function
    GO:0003729    mRNA binding    Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
biological process
    GO:0031123    RNA 3'-end processing    Any process involved in forming the mature 3' end of an RNA molecule.
    GO:0006396    RNA processing    Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
    GO:0006379    mRNA cleavage    Any process in which a pre-mRNA or mRNA molecule is cleaved at specific sites or in a regulated manner.
    GO:0006397    mRNA processing    Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
cellular component
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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 Related Entries

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        CSTF3_MOUSE | Q99LI7: 2ooe

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