2OHJ - JenaLib

Asym.Unit - manually (Jmol Viewer)

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF COENZYME F420H2 OXIDASE (FPRA), A DIIRON FLAVOPROTEIN, INACTIVE OXIDIZED STATE

Authors :   H. Seedorf, E. Warkentin, U. Ermler

Date :   10 Jan 07 (Deposition) - 22 May 07 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.26

Chains :   Asym. Unit : A,B,D,E
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: D,E  (1x)
Biol. Unit 3: A,B,D,E  (2x)
Biol. Unit 4: A,B,D,E  (1x)
Biol. Unit 5: A (1x),B (1x),D (1x),E (1x)

Keywords :   Beta-Lactamase Like Domain, Flavodoxine Like Domain, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. Seedorf, C. H. Hagemeier, S. Shima, R. K. Thauer, E. Warkentin, U. Ermler
Structure Of Coenzyme F420H2 Oxidase (Fpra), A Di-Iron Flavoprotein From Methanogenic Archaea Catalyzing The Reduction Of O2 To H2O.
Febs J. V. 274 1588 2007
PubMed-ID: 17480207 | Reference-DOI: 10.1111/J.1742-4658.2007.05706.X

Molecule 1 - TYPE A FLAVOPROTEIN FPRA
	Chains	:	A, B, D, E
	EC Number	:	1.-.-.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	FPRA, FPAA
	Organism Scientific	:	METHANOTHERMOBACTER THERMAUTOTROPHICUS
	Organism Taxid	:	145262
	Strain	:	DSZM2133
	Synonym	:	FMN-PROTEIN FPRA, FLAVOPROTEIN A

		1	2	3	4
Asymmetric Unit	:	A	B	D	E
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			D	E
Biological Unit 3 (2x)	:	A	B	D	E
Biological Unit 4 (1x)	:	A	B	D	E
Biological Unit 5 (1x)	:	A (1x)	B (1x)	D (1x)	E (1x)

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 23)

No.	Name	Count	Type	Full Name
1	CL	7	Ligand/Ion	CHLORIDE ION
2	FE	12	Ligand/Ion	FE (III) ION
3	FMN	4	Ligand/Ion	FLAVIN MONONUCLEOTIDE

Biological Unit 1 (1, 2)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	FE	-1	Ligand/Ion	FE (III) ION
3	FMN	2	Ligand/Ion	FLAVIN MONONUCLEOTIDE

Biological Unit 2 (1, 2)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	FE	-1	Ligand/Ion	FE (III) ION
3	FMN	2	Ligand/Ion	FLAVIN MONONUCLEOTIDE

Biological Unit 3 (1, 8)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	FE	-1	Ligand/Ion	FE (III) ION
3	FMN	8	Ligand/Ion	FLAVIN MONONUCLEOTIDE

Biological Unit 4 (1, 4)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	FE	-1	Ligand/Ion	FE (III) ION
3	FMN	4	Ligand/Ion	FLAVIN MONONUCLEOTIDE

Biological Unit 5 (1, 2)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	FE	-1	Ligand/Ion	FE (III) ION
3	FMN	2	Ligand/Ion	FLAVIN MONONUCLEOTIDE

Asymmetric Unit (22, 22)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS A:88 , ASP A:170 , HIS A:233	BINDING SITE FOR RESIDUE FE A 501
02	AC2	SOFTWARE	HIS A:26 , GLU A:85 , HOH A:792 , HIS B:267	BINDING SITE FOR RESIDUE FE A 502
03	AC3	SOFTWARE	ASP B:87 , HIS B:88 , ASP B:170 , HIS B:233	BINDING SITE FOR RESIDUE FE B 1501
04	AC4	SOFTWARE	HIS A:267 , HIS B:26 , GLU B:85	BINDING SITE FOR RESIDUE FE B 1502
05	AC5	SOFTWARE	HIS D:88 , ASP D:170 , HIS D:233 , HOH D:2799 , HOH D:2831	BINDING SITE FOR RESIDUE FE D 2501
06	AC6	SOFTWARE	HIS D:26 , GLU D:85 , ASP D:87 , HOH D:2828 , HIS E:267	BINDING SITE FOR RESIDUE FE D 2502
07	AC7	SOFTWARE	ASP E:87 , HIS E:88 , ASP E:170 , HIS E:233	BINDING SITE FOR RESIDUE FE E 3501
08	AC8	SOFTWARE	HIS D:267 , HIS E:26 , GLU E:85	BINDING SITE FOR RESIDUE FE E 3502
09	AC9	SOFTWARE	ASP A:320 , HIS B:151 , HOH B:1778 , HOH B:1779	BINDING SITE FOR RESIDUE FE A 511
10	BC1	SOFTWARE	HIS A:151 , HOH A:753 , ASP B:320 , HOH B:1833	BINDING SITE FOR RESIDUE FE B 512
11	BC2	SOFTWARE	GLU B:74 , HIS D:151 , ASP E:320 , HOH E:3761	BINDING SITE FOR RESIDUE FE D 513
12	BC3	SOFTWARE	ASP D:320 , HIS E:151 , HOH E:3762	BINDING SITE FOR RESIDUE FE E 514
13	BC4	SOFTWARE	ARG A:298	BINDING SITE FOR RESIDUE CL A 515
14	BC5	SOFTWARE	TYR A:323 , ARG B:298	BINDING SITE FOR RESIDUE CL A 516
15	BC6	SOFTWARE	ARG D:298 , TYR E:323 , HOH E:3828	BINDING SITE FOR RESIDUE CL D 517
16	BC7	SOFTWARE	HIS D:294 , TYR D:323 , ASN E:24 , ARG E:298	BINDING SITE FOR RESIDUE CL D 518
17	BC8	SOFTWARE	ARG E:122	BINDING SITE FOR RESIDUE CL E 520
18	BC9	SOFTWARE	PRO D:148 , LEU D:149 , LYS D:213 , HOH D:2769	BINDING SITE FOR RESIDUE CL D 521
19	CC1	SOFTWARE	THR A:265 , MET A:266 , HIS A:267 , GLY A:268 , SER A:269 , THR A:270 , PRO A:316 , THR A:317 , ILE A:318 , TYR A:319 , ASP A:320 , SER A:351 , MET A:352 , GLY A:353 , GLY A:354 , ASN A:355 , GLY A:356 , TYR A:381 , HOH A:705 , HOH A:707 , HOH A:777 , HIS B:26 , HIS B:151 , LEU B:202	BINDING SITE FOR RESIDUE FMN A 701
20	CC2	SOFTWARE	HIS A:151 , LEU A:202 , THR B:265 , MET B:266 , HIS B:267 , GLY B:268 , SER B:269 , THR B:270 , PRO B:316 , THR B:317 , ILE B:318 , TYR B:319 , ASP B:320 , SER B:351 , MET B:352 , GLY B:353 , GLY B:354 , ASN B:355 , GLY B:356 , TYR B:381 , HOH B:1712 , HOH B:1745	BINDING SITE FOR RESIDUE FMN B 1701
21	CC3	SOFTWARE	THR D:265 , MET D:266 , HIS D:267 , GLY D:268 , SER D:269 , THR D:270 , PRO D:316 , THR D:317 , ILE D:318 , TYR D:319 , ASP D:320 , SER D:351 , MET D:352 , GLY D:353 , GLY D:354 , ASN D:355 , GLY D:356 , TYR D:381 , HOH D:2714 , HOH D:2738 , HIS E:26 , HIS E:151	BINDING SITE FOR RESIDUE FMN D 2701
22	CC4	SOFTWARE	HIS D:26 , HIS D:151 , THR E:265 , MET E:266 , HIS E:267 , GLY E:268 , SER E:269 , THR E:270 , PRO E:316 , THR E:317 , ILE E:318 , TYR E:319 , ASP E:320 , SER E:351 , MET E:352 , GLY E:353 , GLY E:354 , ASN E:355 , GLY E:356 , TYR E:381 , HOH E:3711 , HOH E:3733	BINDING SITE FOR RESIDUE FMN E 3701

(no "SS Bond" information available for 2OHJ)

(no "Cis Peptide Bond" information available for 2OHJ)

(no "SAP(SNP)/Variant" information available for 2OHJ)

Asymmetric Unit (2, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FLAVODOXIN_LIKE	PS50902	Flavodoxin-like domain profile.	FPRA_METTM	259-399	4	A:259-399 B:259-399 D:259-399 E:259-399
2	FLAVODOXIN	PS00201	Flavodoxin signature.	FPRA_METTM	261-277	4	A:261-277 B:261-277 D:261-277 E:261-277

Biological Unit 1 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FLAVODOXIN_LIKE	PS50902	Flavodoxin-like domain profile.	FPRA_METTM	259-399	2	A:259-399 B:259-399 - -
2	FLAVODOXIN	PS00201	Flavodoxin signature.	FPRA_METTM	261-277	2	A:261-277 B:261-277 - -

Biological Unit 2 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FLAVODOXIN_LIKE	PS50902	Flavodoxin-like domain profile.	FPRA_METTM	259-399	2	- - D:259-399 E:259-399
2	FLAVODOXIN	PS00201	Flavodoxin signature.	FPRA_METTM	261-277	2	- - D:261-277 E:261-277

Biological Unit 3 (2, 16)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FLAVODOXIN_LIKE	PS50902	Flavodoxin-like domain profile.	FPRA_METTM	259-399	8	A:259-399 B:259-399 D:259-399 E:259-399
2	FLAVODOXIN	PS00201	Flavodoxin signature.	FPRA_METTM	261-277	8	A:261-277 B:261-277 D:261-277 E:261-277

Biological Unit 4 (2, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FLAVODOXIN_LIKE	PS50902	Flavodoxin-like domain profile.	FPRA_METTM	259-399	4	A:259-399 B:259-399 D:259-399 E:259-399
2	FLAVODOXIN	PS00201	Flavodoxin signature.	FPRA_METTM	261-277	4	A:261-277 B:261-277 D:261-277 E:261-277

Biological Unit 5 (2, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FLAVODOXIN_LIKE	PS50902	Flavodoxin-like domain profile.	FPRA_METTM	259-399	4	A:259-399 B:259-399 D:259-399 E:259-399
2	FLAVODOXIN	PS00201	Flavodoxin signature.	FPRA_METTM	261-277	4	A:261-277 B:261-277 D:261-277 E:261-277

(no "Exon" information available for 2OHJ)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:403
 aligned with FPRA_METTM | Q50497 from UniProtKB/Swiss-Prot  Length:404

    Alignment length:403
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400   
           FPRA_METTM     1 MKAAAKRISDGVYWTGVLDWDLRNYHGYTLQGTTYNAYLVCGDEGVALIDNSYPGTFDELMARVEDALQQVGMERVDYIIQNHVEKDHSGVLVELHRRFPEAPIYCTEVAVKGLLKHYPSLREAEFMTVKTGDVLDLGGKTLTFLETPLLHWPDSMFTLLDEDGILFSNDAFGQHLCCPQRLDREIPEYILMDAARKFYANLITPLSKLVLKKFDEVKELGLLERIQMIAPSHGQIWTDPMKIIEAYTGWATGMVDERVTVIYDTMHGSTRKMAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDILESGAIALGAPTIYDEPYPSVGDLLMYLRGLKFNRTLTRKALVFGSMGGNGGATGTMKELLAEAGFDVACEEEVYYVPTGDELDACFEAGRKLAAEIR 403
               SCOP domains d2ohja1 A:1-254 automated matches                                                                                                                                                                                                                             d2ohja2 A:255-403 automated matches                                                                                                                   SCOP domains
               CATH domains 2ohjA01 A:1-252 Metallo-beta-lactamase, chain A                                                                                                                                                                                                             -----2ohjA02 A:258-401  [code=3.40.50.360, no name defined]                                                                                          -- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee..eee..eee....ee..ee...eee..eeee....eeee......hhhhhhhhhhhhhhhhh.....eee....hhhhhhhhhhhhhhh....eeehhhhhhhhhhhhhhhhh..eee.....eee....eeeeee.........eeeee....eee..............hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhh.eee........hhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhhhhhh...eeeeee....hhhhhhhhhhh..eeeee..ee..ee.hhhhhhhhhhhhhhhhhh...eeeeeeee....hhhhhhhhhhhhh..eeeeeeeee...hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FLAVODOXIN_LIKE  PDB: A:259-399 UniProt: 259-399                                                                                             ---- PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FLAVODOXIN       ------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ohj A   1 MKAAAKRISDGVYWTGVLDWDLRNYHGYTLQGTTYNAYLVCGDEGVALIDNSYPGTFDELMARVEDALQQVGMERVDYIIQNHVEKDHSGVLVELHRRFPEAPIYCTEVAVKGLLKHYPSLREAEFMTVKTGDVLDLGGKTLTFLETPLLHWPDSMFTLLDEDGILFSNDAFGQHLCCPQRLDREIPEYILMDAARKFYANLITPLSKLVLKKFDEVKELGLLERIQMIAPSHGQIWTDPMKIIEAYTGWATGMVDERVTVIYDTMHGSTRKMAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDILESGAIALGAPTIYDEPYPSVGDLLMYLRGLKFNRTLTRKALVFGSMGGNGGATGTMKELLAEAGFDVACEEEVYYVPTGDELDACFEAGRKLAAEIR 403
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400

Chain B from PDB  Type:PROTEIN  Length:403
 aligned with FPRA_METTM | Q50497 from UniProtKB/Swiss-Prot  Length:404

    Alignment length:403
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400   
           FPRA_METTM     1 MKAAAKRISDGVYWTGVLDWDLRNYHGYTLQGTTYNAYLVCGDEGVALIDNSYPGTFDELMARVEDALQQVGMERVDYIIQNHVEKDHSGVLVELHRRFPEAPIYCTEVAVKGLLKHYPSLREAEFMTVKTGDVLDLGGKTLTFLETPLLHWPDSMFTLLDEDGILFSNDAFGQHLCCPQRLDREIPEYILMDAARKFYANLITPLSKLVLKKFDEVKELGLLERIQMIAPSHGQIWTDPMKIIEAYTGWATGMVDERVTVIYDTMHGSTRKMAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDILESGAIALGAPTIYDEPYPSVGDLLMYLRGLKFNRTLTRKALVFGSMGGNGGATGTMKELLAEAGFDVACEEEVYYVPTGDELDACFEAGRKLAAEIR 403
               SCOP domains d2ohjb1 B:1-254 automated matches                                                                                                                                                                                                                             d2ohjb2 B:255-403 automated matches                                                                                                                   SCOP domains
               CATH domains 2ohjB01 B:1-252 Metallo-beta-lactamase, chain A                                                                                                                                                                                                             -----2ohjB02 B:258-401  [code=3.40.50.360, no name defined]                                                                                          -- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee..eee..eee....ee..ee...eee..eeee....eeee......hhhhhhhhhhhhhhhhh.....eee....hhhhhhhhhhhhhhh....eeehhhhhhhhhhhhhhhhhh.eee.....eee....eeeeee.........eeeee....eee..............hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhh.eee........hhhhhhhhhhhhhh.....eeeeee....hhhhhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhh..eeeee..ee..ee.hhhhhhhhhhhhhhhhhh...eeeeeeee....hhhhhhhhhhhhh..eeeeeeeee...hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FLAVODOXIN_LIKE  PDB: B:259-399 UniProt: 259-399                                                                                             ---- PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FLAVODOXIN       ------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ohj B   1 MKAAAKRISDGVYWTGVLDWDLRNYHGYTLQGTTYNAYLVCGDEGVALIDNSYPGTFDELMARVEDALQQVGMERVDYIIQNHVEKDHSGVLVELHRRFPEAPIYCTEVAVKGLLKHYPSLREAEFMTVKTGDVLDLGGKTLTFLETPLLHWPDSMFTLLDEDGILFSNDAFGQHLCCPQRLDREIPEYILMDAARKFYANLITPLSKLVLKKFDEVKELGLLERIQMIAPSHGQIWTDPMKIIEAYTGWATGMVDERVTVIYDTMHGSTRKMAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDILESGAIALGAPTIYDEPYPSVGDLLMYLRGLKFNRTLTRKALVFGSMGGNGGATGTMKELLAEAGFDVACEEEVYYVPTGDELDACFEAGRKLAAEIR 403
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400

Chain D from PDB  Type:PROTEIN  Length:403
 aligned with FPRA_METTM | Q50497 from UniProtKB/Swiss-Prot  Length:404

    Alignment length:403
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400   
           FPRA_METTM     1 MKAAAKRISDGVYWTGVLDWDLRNYHGYTLQGTTYNAYLVCGDEGVALIDNSYPGTFDELMARVEDALQQVGMERVDYIIQNHVEKDHSGVLVELHRRFPEAPIYCTEVAVKGLLKHYPSLREAEFMTVKTGDVLDLGGKTLTFLETPLLHWPDSMFTLLDEDGILFSNDAFGQHLCCPQRLDREIPEYILMDAARKFYANLITPLSKLVLKKFDEVKELGLLERIQMIAPSHGQIWTDPMKIIEAYTGWATGMVDERVTVIYDTMHGSTRKMAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDILESGAIALGAPTIYDEPYPSVGDLLMYLRGLKFNRTLTRKALVFGSMGGNGGATGTMKELLAEAGFDVACEEEVYYVPTGDELDACFEAGRKLAAEIR 403
               SCOP domains d2ohjd1 D:1-254 automated matches                                                                                                                                                                                                                             d2ohjd2 D:255-403 automated matches                                                                                                                   SCOP domains
               CATH domains 2ohjD01 D:1-252 Metallo-beta-lactamase, chain A                                                                                                                                                                                                             -----2ohjD02 D:258-401  [code=3.40.50.360, no name defined]                                                                                          -- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee..eee..eee....ee..ee...eee..eeee....eeee......hhhhhhhhhhhhhhhhh.....eee....hhhhhhhhhhhhhhh....eeehhhhhhhhhhhhhhhhhh.eee.....eee....eeeeee.........eeeee....eee..............hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.......eee........hhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhhhhhh...eeeeee....hhhhhhhhhhh..eeeee..ee..ee.hhhhhhhhhhhhhhhhhh...eeeeeeee....hhhhhhhhhhhhh..eeeeeeeee...hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FLAVODOXIN_LIKE  PDB: D:259-399 UniProt: 259-399                                                                                             ---- PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FLAVODOXIN       ------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ohj D   1 MKAAAKRISDGVYWTGVLDWDLRNYHGYTLQGTTYNAYLVCGDEGVALIDNSYPGTFDELMARVEDALQQVGMERVDYIIQNHVEKDHSGVLVELHRRFPEAPIYCTEVAVKGLLKHYPSLREAEFMTVKTGDVLDLGGKTLTFLETPLLHWPDSMFTLLDEDGILFSNDAFGQHLCCPQRLDREIPEYILMDAARKFYANLITPLSKLVLKKFDEVKELGLLERIQMIAPSHGQIWTDPMKIIEAYTGWATGMVDERVTVIYDTMHGSTRKMAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDILESGAIALGAPTIYDEPYPSVGDLLMYLRGLKFNRTLTRKALVFGSMGGNGGATGTMKELLAEAGFDVACEEEVYYVPTGDELDACFEAGRKLAAEIR 403
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400

Chain E from PDB  Type:PROTEIN  Length:403
 aligned with FPRA_METTM | Q50497 from UniProtKB/Swiss-Prot  Length:404

    Alignment length:403
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400   
           FPRA_METTM     1 MKAAAKRISDGVYWTGVLDWDLRNYHGYTLQGTTYNAYLVCGDEGVALIDNSYPGTFDELMARVEDALQQVGMERVDYIIQNHVEKDHSGVLVELHRRFPEAPIYCTEVAVKGLLKHYPSLREAEFMTVKTGDVLDLGGKTLTFLETPLLHWPDSMFTLLDEDGILFSNDAFGQHLCCPQRLDREIPEYILMDAARKFYANLITPLSKLVLKKFDEVKELGLLERIQMIAPSHGQIWTDPMKIIEAYTGWATGMVDERVTVIYDTMHGSTRKMAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDILESGAIALGAPTIYDEPYPSVGDLLMYLRGLKFNRTLTRKALVFGSMGGNGGATGTMKELLAEAGFDVACEEEVYYVPTGDELDACFEAGRKLAAEIR 403
               SCOP domains d2ohje1 E:1-254 automated matches                                                                                                                                                                                                                             d2ohje2 E:255-403 automated matches                                                                                                                   SCOP domains
               CATH domains 2ohjE01 E:1-252 Metallo-beta-lactamase, chain A                                                                                                                                                                                                             -----2ohjE02 E:258-401  [code=3.40.50.360, no name defined]                                                                                          -- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee..eee..eee....ee..ee...eee..eeee....eeee......hhhhhhhhhhhhhhhhh.....eee....hhhhhhhhhhhhhhh....eeeehhhhhhhhhhhhhhhhh.eeee....eee....eeeeee.........eeeee....eee..............hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhh.eee........hhhhhhhhhhhhhh.....eeeeee....hhhhhhhhhhhhhhhh...eeeeee....hhhhhhhhhhh..eeeee..ee..ee.hhhhhhhhhhhhhhhhhh...eeeeeeee....hhhhhhhhhhhhh..eeeeeeeee...hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FLAVODOXIN_LIKE  PDB: E:259-399 UniProt: 259-399                                                                                             ---- PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FLAVODOXIN       ------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ohj E   1 MKAAAKRISDGVYWTGVLDWDLRNYHGYTLQGTTYNAYLVCGDEGVALIDNSYPGTFDELMARVEDALQQVGMERVDYIIQNHVEKDHSGVLVELHRRFPEAPIYCTEVAVKGLLKHYPSLREAEFMTVKTGDVLDLGGKTLTFLETPLLHWPDSMFTLLDEDGILFSNDAFGQHLCCPQRLDREIPEYILMDAARKFYANLITPLSKLVLKKFDEVKELGLLERIQMIAPSHGQIWTDPMKIIEAYTGWATGMVDERVTVIYDTMHGSTRKMAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDILESGAIALGAPTIYDEPYPSVGDLLMYLRGLKFNRTLTRKALVFGSMGGNGGATGTMKELLAEAGFDVACEEEVYYVPTGDELDACFEAGRKLAAEIR 403
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Metallo-hydrolase/oxidoreductase (184)

Superfamily: Metallo-hydrolase/oxidoreductase (184)

Family: automated matches (42)

Protein domain: automated matches (42)

Methanothermobacter thermautotrophicus [TaxId: 145262] (3)

1a	d2ohja1	A:1-254
1b	d2ohjb1	B:1-254
1c	d2ohjd1	D:1-254
1d	d2ohje1	E:1-254

Class: Alpha and beta proteins (a/b) (23833)

Fold: Flavodoxin-like (1057)

Superfamily: Flavoproteins (208)

Family: automated matches (29)

Protein domain: automated matches (29)

Methanothermobacter thermautotrophicus [TaxId: 145262] (3)

2a	d2ohja2	A:255-403
2b	d2ohjb2	B:255-403
2c	d2ohjd2	D:255-403
2d	d2ohje2	E:255-403

(no "Pfam Domain" information available for 2OHJ)

Asymmetric Unit(hide GO term definitions)

Chain A,B,D,E (FPRA_METTM | Q50497)

molecular function
	GO:0010181	FMN binding	Interacting selectively and non-covalently with flavin mono nucleotide. Flavin mono nucleotide (FMN) is the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes.
	GO:0009055	electron carrier activity	Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		CL	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		FE	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		FMN	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]
		AC8	[ RasMol ]	+environment [ RasMol ]
		AC9	[ RasMol ]	+environment [ RasMol ]
		BC1	[ RasMol ]	+environment [ RasMol ]
		BC2	[ RasMol ]	+environment [ RasMol ]
		BC3	[ RasMol ]	+environment [ RasMol ]
		BC4	[ RasMol ]	+environment [ RasMol ]
		BC5	[ RasMol ]	+environment [ RasMol ]
		BC6	[ RasMol ]	+environment [ RasMol ]
		BC7	[ RasMol ]	+environment [ RasMol ]
		BC8	[ RasMol ]	+environment [ RasMol ]
		BC9	[ RasMol ]	+environment [ RasMol ]
		CC1	[ RasMol ]	+environment [ RasMol ]
		CC2	[ RasMol ]	+environment [ RasMol ]
		CC3	[ RasMol ]	+environment [ RasMol ]
		CC4	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2ohj)

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]
		Biological Unit 4	[ Jena3D ]
		Biological Unit 5	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format \| Biol. Unit 3 PNG format \| Biol. Unit 4 PNG format \| Biol. Unit 5 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	2ohj
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	FPRA_METTM \| Q50497
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	1.-.-.-
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	FPRA_METTM \| Q50497
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	FPRA_METTM \| Q50497	:	2ohh 2ohi

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 23)

Sites (22, 22)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 8)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (2, 8)

CATH Domains (2, 8)

Pfam Domains (0, 0)

Gene Ontology (5, 5)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File