2O7X - JenaLib

Title :   DUPLEX DNA CONTAINING AN ABASIC SITE WITH AN OPPOSITE G (BETA ANOMER) IN 5'-G_AC-3' (10 STRUCTURE ENSEMBLE AND AVERAGED STRUCTURE)

Authors :   J. Chen, F. Y. Dupradeau, D. A. Case, C. J. Turner, J. Stubbe

Date :   11 Dec 06 (Deposition) - 27 Nov 07 (Release) - 09 Jul 14 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A,B  (11x)
NMR Structure *: A,B  (1x)

Keywords :   Dna Damage, Ape1, Abasic, Amber, Molecular Dynamics, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Chen, F. Y. Dupradeau, D. A. Case, C. J. Turner, J. Stubbe
Dna Oligonucleotides With A, T, G Or C Opposite An Abasic Site: Structure And Dynamics.
Nucleic Acids Res. V. 36 253 2008
PubMed-ID: 18025040 | Reference-DOI: 10.1093/NAR/GKM622

Compounds

*Molecule 1 - 5'-D(CPCPAPAPAPGP(AAB)PAPCPCPGPGPG)-3'**
	Chains	:	A
	Engineered	:	YES
	Other Details	:	CHEMICALLY SYNTHESIZED
	Synthetic	:	YES

*Molecule 2 - 5'-D(CPCPCPGPGPTPGPCPTPTPTPGPG)-3'**
	Chains	:	B
	Engineered	:	YES
	Synthetic	:	YES

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 1)

Sites (1, 1)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:DNA  Length:13
                                            
                  2o7x A  1 CCAAAGxACCGGG 13
                                  | 10   
                                  7-AAB

Chain B from PDB  Type:DNA  Length:13
                                            
                  2o7x B 14 CCCGGTGCTTTGG 26
                                    23

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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