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(-) Description

Title :  THE CRYSTAL STRUCTURE OF THE PUTATIVE SORC FAMILY TRANSCRIPTIONAL REGULATOR FROM ENTEROCOCCUS FAECALIS
 
Authors :  R. Zhang, M. Zhou, M. Bargassa, A. Joachimiak, Midwest Center For St Genomics (Mcsg)
Date :  27 Nov 06  (Deposition) - 13 Feb 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A
Keywords :  Sorc Family, Transcriptional Regulator, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Zhang, M. Zhou, M. Bargassa, A. Joachimiak
The Crystal Structure Of The Putative Sorc Family Transcriptional Regulator From Enterococcus Faecalis
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - TRANSCRIPTIONAL REGULATOR, SORC FAMILY
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET15B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: ENTEROCOCCUS FAECALIS
    Organism Taxid: 226185
    Strain: V583

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 13)

Asymmetric/Biological Unit (2, 13)
No.NameCountTypeFull Name
1MSE11Mod. Amino AcidSELENOMETHIONINE
2PO42Ligand/IonPHOSPHATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:151 , THR A:152 , THR A:153 , MSE A:249 , ARG A:252 , LYS A:312 , HOH A:407 , HOH A:413 , HOH A:427 , HOH A:561BINDING SITE FOR RESIDUE PO4 A 401
2AC2SOFTWARETYR A:104 , ARG A:317 , LYS A:321 , HOH A:418 , HOH A:519BINDING SITE FOR RESIDUE PO4 A 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2O0M)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2O0M)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2O0M)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 2O0M)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:247
 aligned with Q833I7_ENTFA | Q833I7 from UniProtKB/TrEMBL  Length:345

    Alignment length:247
                                   104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       
         Q833I7_ENTFA    95 HQIEKEMTQYFGIQRCIVVAGDSDIQKKVLSDFGDVLTNTLNLLLPNGENTIAVMGGTTMAMVAENMGSLETEKRHNLFVPARGGIGEAVSVQANSISAVMANKTGGNYRALYVPEQLSRETYNSLLQEPSIQEVLTLISHANCVVHSIGRALHMAARRKMSDDEMVMLKQKNAVAESFGYFFDEEGKVVYKIPRIGLQLKNLQEIPYVVAIAGGKTKAKAIRAYMKNAPKQTWLITDEAAANEILK 341
               SCOP domains d2o0ma1 A:95-341 Transcriptional regulator EF1965                                                                                                                                                                                                       SCOP domains
               CATH domains 2o0mA00 A:95-341  [code=3.40.50.1360, no name defined]                                                                                                                                                                                                  CATH domains
               Pfam domains Sugar-bind-2o0mA01 A:95-341                                                                                                                                                                                                                             Pfam domains
         Sec.struct. author hhhhhhhhhhhh..eeeee.......hhhhhhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhh........eeeeeee.......hhhhhhhhhhhhhhhhhh.ee.........hhhhhhhhhhhhhhhhhhhhhhh..eeee..eehhhhhhhh..hhhhhhhhhhh...eee..eee.....eeee......hhhhhhhh.eeeee..hhhhhhhhhhhhh......eeeeehhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2o0m A  95 HQIEKEmTQYFGIQRCIVVAGDSDIQKKVLSDFGDVLTNTLNLLLPNGENTIAVmGGTTmAmVAENmGSLETEKRHNLFVPARGGIGEAVSVQANSISAVmANKTGGNYRALYVPEQLSRETYNSLLQEPSIQEVLTLISHANCVVHSIGRALHmAARRKmSDDEmVmLKQKNAVAESFGYFFDEEGKVVYKIPRIGLQLKNLQEIPYVVAIAGGKTKAKAIRAYmKNAPKQTWLITDEAAANEILK 341
                                  |104       114       124       134       144    |  154 |    |164       174       184       194|      204       214       224       234       244    |  254|    | 264       274       284       294       304       314     | 324       334       
                                  |                                             149-MSE| |    |                               195-MSE                                               249-MSE |    | |                                                       320-MSE                 
                                101-MSE                                              154-MSE  |                                                                                           255-MSE| |                                                                               
                                                                                       156-MSE|                                                                                                260-MSE                                                                             
                                                                                            161-MSE                                                                                              262-MSE
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: ISOCOT_Fold (53)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q833I7_ENTFA | Q833I7)
molecular function
    GO:0030246    carbohydrate binding    Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.

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