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(-) Description

Title :  STRUCTURE OF THE 6TH ORF OF THE RHODOBACTER BLASTICA ATPASE OPERON; MAJASTRIDIN
 
Authors :  C. Enroth, A. Strid
Date :  20 Nov 06  (Deposition) - 18 Dec 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.10
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A,B  (2x)
Keywords :  Majastridin, Atpase Operon, Glycosyl Transferase, Rossmann Fold, Sulphur Sad, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Enroth, A. Strid
Crystal Structure Of A Protein, Structurally Related To Glycosyltransferases, Encoded In The Rhodobacter Blasticus Atp Operon.
Biochim. Biophys. Acta V. 1784 379 2008
PubMed-ID: 18067873  |  Reference-DOI: 10.1016/J.BBAPAP.2007.11.005

(-) Compounds

Molecule 1 - ATP SYNTHASE SUBUNITS REGION ORF 6
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: RHODOBACTER BLASTICUS
    Organism Taxid: 1075

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB
Biological Unit 2 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
Biological Unit 2 (1, 4)
No.NameCountTypeFull Name
1GOL4Ligand/IonGLYCEROL

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:115 , ILE A:133 , ASP A:135 , ASP A:154 , HIS A:202 , VAL A:235 , HOH A:1258BINDING SITE FOR RESIDUE GOL A 1201
2AC2SOFTWAREALA B:115 , ILE B:133 , ASP B:135 , ASP B:154 , HIS B:202 , VAL B:235 , HOH B:1253 , HOH B:1393BINDING SITE FOR RESIDUE GOL B 1202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2NXV)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Val A:146 -Pro A:147
2Val B:146 -Pro B:147

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2NXV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2NXV)

(-) Exons   (0, 0)

(no "Exon" information available for 2NXV)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:249
 aligned with YAT6_RHOBL | P05449 from UniProtKB/Swiss-Prot  Length:249

    Alignment length:249
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240         
           YAT6_RHOBL     1 MKPVPTYVQDKDESTLMFSVCSLVRDQAKYDRLLESFERFGFTPDKAEFLAADNREGNQFHGFSWHKQMLPRCKGRYVIFCHEDVELVDRGYDDLVAAIEALEEADPKWLVAGVAGSPWRPLNHSVTAQALHISDVFGNDRRRGNVPCRVESLDECFLLMRRLKPVLNSYDMQGFHYYGADLCLQAEFLGGRAYAIDFHLHHYGRAIADENFHRLRQEMAQKYRRWFPGRILHCVTGRVALGGGWYEAR 249
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee.........eeeeeee.hhhhhhhhhhhhhhh......eeeeeee..........hhhhhhhhhh...eeeeee..ee....hhhhhhhhhhhhhhhh..eeeee.eeee...........eeeeee..eeeeee....eeeeee...eeeee...............hhhhhhhhhhhhh..eeee.....ee......hhhhhhhhhhhhhhhh......eeee..eeee..hhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2nxv A   1 MKPVPTYVQDKDESTLMFSVCSLVRDQAKYDRLLESFERFGFTPDKAEFLAADNREGNQFHGFSWHKQMLPRCKGRYVIFCHEDVELVDRGYDDLVAAIEALEEADPKWLVAGVAGSPWRPLNHSVTAQALHISDVFGNDRRRGNVPCRVESLDECFLLMRRLKPVLNSYDMQGFHYYGADLCLQAEFLGGRAYAIDFHLHHYGRAIADENFHRLRQEMAQKYRRWFPGRILHCVTGRVALGGGWYEAR 249
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240         


Chain B from PDB  Type:PROTEIN  Length:249
 aligned with YAT6_RHOBL | P05449 from UniProtKB/Swiss-Prot  Length:249

    Alignment length:249
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240         
           YAT6_RHOBL     1 MKPVPTYVQDKDESTLMFSVCSLVRDQAKYDRLLESFERFGFTPDKAEFLAADNREGNQFHGFSWHKQMLPRCKGRYVIFCHEDVELVDRGYDDLVAAIEALEEADPKWLVAGVAGSPWRPLNHSVTAQALHISDVFGNDRRRGNVPCRVESLDECFLLMRRLKPVLNSYDMQGFHYYGADLCLQAEFLGGRAYAIDFHLHHYGRAIADENFHRLRQEMAQKYRRWFPGRILHCVTGRVALGGGWYEAR 249
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -----------------Glyco_tranf_2_5-2nxvB01 B:18-223                                                                                                                                                                              -------------------------- Pfam domains (1)
           Pfam domains (2) -----------------Glyco_tranf_2_5-2nxvB02 B:18-223                                                                                                                                                                              -------------------------- Pfam domains (2)
         Sec.struct. author .....eee.........eeeeeee.hhhhhhhhhhhhhhh......eeeeeee..........hhhhhhhhhh...eeeeee..ee....hhhhhhhhhhhhhhhh..eeeee.eeee...........eeeeee..eeeeee....eeeeee...eeeee...............hhhhhhhhhhhhh..eeee.....ee......hhhhhhhhhhhhhhhh......eeee..eeee..hhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2nxv B   1 MKPVPTYVQDKDESTLMFSVCSLVRDQAKYDRLLESFERFGFTPDKAEFLAADNREGNQFHGFSWHKQMLPRCKGRYVIFCHEDVELVDRGYDDLVAAIEALEEADPKWLVAGVAGSPWRPLNHSVTAQALHISDVFGNDRRRGNVPCRVESLDECFLLMRRLKPVLNSYDMQGFHYYGADLCLQAEFLGGRAYAIDFHLHHYGRAIADENFHRLRQEMAQKYRRWFPGRILHCVTGRVALGGGWYEAR 249
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2NXV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2NXV)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: GT-A (172)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2NXV)

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  2nxv
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        YAT6_RHOBL | P05449: 2qgi

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