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(-) Description

Title :  STRUCTURAL AND MECHANISTIC CHANGES ALONG AN ENGINEERED PATH FROM METALLO TO NON-METALLO KDO8P SYNTHASE.
 
Authors :  F. Kona, X. Xu, P. Martin, P. Kuzmic, D. L. Gatti
Date :  17 Nov 06  (Deposition) - 24 Apr 07  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.11
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Biol. Unit 3:  I,J,K,L  (1x)
Keywords :  Kdo, Kdo8P, Kdo8Ps, Pep, A5P, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Kona, X. Xu, P. Martin, P. Kuzmic, D. L. Gatti
Structural And Mechanistic Changes Along An Engineered Path From Metallo To Nonmetallo 3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthases.
Biochemistry V. 46 4532 2007
PubMed-ID: 17381075  |  Reference-DOI: 10.1021/BI6024879
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE
    Chains: A, B, C, D, E, F, G, H, I, J, K, L
    EC Number: 2.5.1.55
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: KDSA
    Mutation: YES
    Organism Scientific: AQUIFEX AEOLICUS
    Organism Taxid: 63363
    Synonym: PHOSPHO-2- DEHYDRO-3-DEOXYOCTONATE ALDOLASE, 3- DEOXY-D-MANNO-OCTULOSONIC ACID 8- PHOSPHATE SYNTHETASE, KDO-8-PHOSPHATE SYNTHETASE, KDO 8-P SYNTHASE, KDOPS

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDEFGHIJKL
Biological Unit 1 (1x): ABCD        
Biological Unit 2 (1x):     EFGH    
Biological Unit 3 (1x):         IJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 24)

Asymmetric Unit (2, 24)
No.NameCountTypeFull Name
1PEP12Ligand/IonPHOSPHOENOLPYRUVATE
2PO412Ligand/IonPHOSPHATE ION
Biological Unit 1 (2, 8)
No.NameCountTypeFull Name
1PEP4Ligand/IonPHOSPHOENOLPYRUVATE
2PO44Ligand/IonPHOSPHATE ION
Biological Unit 2 (2, 8)
No.NameCountTypeFull Name
1PEP4Ligand/IonPHOSPHOENOLPYRUVATE
2PO44Ligand/IonPHOSPHATE ION
Biological Unit 3 (2, 8)
No.NameCountTypeFull Name
1PEP4Ligand/IonPHOSPHOENOLPYRUVATE
2PO44Ligand/IonPHOSPHATE ION

(-) Sites  (24, 24)

Asymmetric Unit (24, 24)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:1049 , SER A:1050 , LYS A:1196 , SER A:1197 , HOH A:5079 , HOH A:6212BINDING SITE FOR RESIDUE PO4 A 1280
02AC2SOFTWAREARG B:2049 , SER B:2050 , LYS B:2196 , SER B:2197 , HOH B:5152 , HOH B:5484 , HOH B:6483BINDING SITE FOR RESIDUE PO4 B 1281
03AC3SOFTWAREARG C:3049 , SER C:3050 , SER C:3197 , HOH C:5889 , HOH C:6214 , ARG D:4106BINDING SITE FOR RESIDUE PO4 C 1282
04AC4SOFTWAREARG D:4049 , SER D:4050 , LYS D:4196 , SER D:4197 , HOH D:5701 , HOH D:6095BINDING SITE FOR RESIDUE PO4 D 1283
05AC5SOFTWAREARG E:1049 , SER E:1050 , SER E:1197BINDING SITE FOR RESIDUE PO4 E 1284
06AC6SOFTWAREARG F:2049 , SER F:2050 , LYS F:2196 , SER F:2197 , HOH F:6145BINDING SITE FOR RESIDUE PO4 F 1285
07AC7SOFTWAREARG G:3049 , SER G:3050 , LYS G:3196 , SER G:3197 , HOH G:5692 , HOH G:5916 , HOH G:6516 , HOH G:6529BINDING SITE FOR RESIDUE PO4 G 1286
08AC8SOFTWAREARG H:4049 , SER H:4050 , HOH H:5429 , HOH H:5879 , HOH H:6044 , HOH H:6463BINDING SITE FOR RESIDUE PO4 H 1287
09AC9SOFTWAREARG I:1049 , SER I:1050 , LYS I:1196 , SER I:1197 , HOH I:5098 , HOH I:5612BINDING SITE FOR RESIDUE PO4 I 1288
10BC1SOFTWAREARG J:2049 , SER J:2050 , HOH J:5475 , HOH J:5988BINDING SITE FOR RESIDUE PO4 J 1289
11BC2SOFTWAREARG K:3049 , SER K:3050 , LYS K:3196 , SER K:3197 , HOH K:6104 , HOH K:6207BINDING SITE FOR RESIDUE PO4 K 1290
12BC3SOFTWAREARG K:3106 , ARG L:4049 , SER L:4050 , SER L:4197 , HOH L:6025 , HOH L:6249BINDING SITE FOR RESIDUE PO4 L 1291
13BC4SOFTWARELYS A:1041 , SER A:1043 , LYS A:1046 , GLN A:1099 , PRO A:1101 , ALA A:1102 , LYS A:1124 , ARG A:1154 , HIS A:1185 , PHE A:1220 , HOH A:5071 , HOH A:5095 , HOH A:5140 , HOH A:5357BINDING SITE FOR RESIDUE PEP A 1268
14BC5SOFTWARELYS B:2041 , SER B:2043 , LYS B:2046 , GLN B:2099 , PRO B:2101 , ALA B:2102 , LYS B:2124 , ARG B:2154 , HIS B:2185 , PHE B:2220 , HOH B:5030 , HOH B:5060 , HOH B:5108 , HOH B:5155BINDING SITE FOR RESIDUE PEP B 1269
15BC6SOFTWARELYS C:3041 , SER C:3043 , LYS C:3046 , GLN C:3099 , PRO C:3101 , ALA C:3102 , LYS C:3124 , ARG C:3154 , HIS C:3185 , PHE C:3220 , HOH C:5543 , HOH C:5587 , HOH C:5607BINDING SITE FOR RESIDUE PEP C 1270
16BC7SOFTWAREASN D:4011 , LYS D:4041 , SER D:4043 , LYS D:4046 , GLN D:4099 , PRO D:4101 , ALA D:4102 , LYS D:4124 , ARG D:4154 , HIS D:4185 , PHE D:4220 , GLU D:4222 , HOH D:5345 , HOH D:5768 , HOH D:5977BINDING SITE FOR RESIDUE PEP D 1271
17BC8SOFTWAREASN E:1011 , LYS E:1041 , SER E:1043 , LYS E:1046 , GLN E:1099 , PRO E:1101 , ALA E:1102 , LYS E:1124 , ARG E:1154 , HIS E:1185 , PHE E:1220 , GLU E:1222 , HOH E:5830BINDING SITE FOR RESIDUE PEP E 1272
18BC9SOFTWARELYS F:2041 , SER F:2043 , LYS F:2046 , GLN F:2099 , PRO F:2101 , ALA F:2102 , LYS F:2124 , ARG F:2154 , HIS F:2185 , PHE F:2220 , GLU F:2222 , HOH F:5595 , HOH F:5903 , HOH F:6076BINDING SITE FOR RESIDUE PEP F 1273
19CC1SOFTWARELYS G:3041 , SER G:3043 , LYS G:3046 , GLN G:3099 , PRO G:3101 , ALA G:3102 , LYS G:3124 , ARG G:3154 , HIS G:3185 , PHE G:3220 , HOH G:5092 , HOH G:5162 , HOH G:5221 , HOH G:5386BINDING SITE FOR RESIDUE PEP G 1274
20CC2SOFTWARELYS H:4041 , SER H:4043 , LYS H:4046 , GLN H:4099 , PRO H:4101 , ALA H:4102 , LYS H:4124 , ARG H:4154 , HIS H:4185 , PHE H:4220 , HOH H:5085 , HOH H:5169 , HOH H:5299 , HOH H:5403BINDING SITE FOR RESIDUE PEP H 1275
21CC3SOFTWARELYS I:1041 , SER I:1043 , LYS I:1046 , GLN I:1099 , PRO I:1101 , ALA I:1102 , LYS I:1124 , ARG I:1154 , HIS I:1185 , PHE I:1220 , HOH I:5049 , HOH I:5135 , HOH I:5151 , HOH I:5170BINDING SITE FOR RESIDUE PEP I 1276
22CC4SOFTWARELYS J:2041 , SER J:2043 , LYS J:2046 , GLN J:2099 , PRO J:2101 , ALA J:2102 , LYS J:2124 , ARG J:2154 , HIS J:2185 , PHE J:2220 , HOH J:5041 , HOH J:5156 , HOH J:5306 , HOH J:5650BINDING SITE FOR RESIDUE PEP J 1277
23CC5SOFTWAREASN K:3011 , LYS K:3041 , SER K:3043 , LYS K:3046 , GLN K:3099 , PRO K:3101 , ALA K:3102 , LYS K:3124 , ARG K:3154 , HIS K:3185 , GLU K:3222 , HOH K:5313 , HOH K:5921BINDING SITE FOR RESIDUE PEP K 1278
24CC6SOFTWARELYS L:4041 , SER L:4043 , LYS L:4046 , GLN L:4099 , PRO L:4101 , ALA L:4102 , LYS L:4124 , ARG L:4154 , PHE L:4220 , HOH L:5550 , HOH L:5951 , HOH L:6343 , HOH L:6632BINDING SITE FOR RESIDUE PEP L 1279

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2NXH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2NXH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2NXH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2NXH)

(-) Exons   (0, 0)

(no "Exon" information available for 2NXH)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:262
 aligned with KDSA_AQUAE | O66496 from UniProtKB/Swiss-Prot  Length:267

    Alignment length:262
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262  
          KDSA_AQUAE      3 KFLVIAGPCAIESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLEYGVKALRKVKEEFGLKITTDIHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAVNVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGYNNLVVDFRSLPIMKQWAKVIYDATHSVQLPGGLGDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDASTQLPLSQLEGIIEAILEIREVASKYYETI  264
               SCOP domains d2nxha_ A: 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase)                                                                                                                                                                                          SCOP domains
               CATH domains 2nxhA00 A:1003-1264 Aldolase class I                                                                                                                                                                                                                                   CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.....hhhhhhhhhhhhhhhhhhh...eeeee.................hhhhhhhhhhhhhhhhh.eeeee..hhhhhhhhhh...eeeehhhhh.hhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhhh....eeeee..ee.....ee...hhhhhhh...eeeee.hhh.ee........ee...hhhhhhhhhhhhh..eeeeeee.hhhhh..hhhhhee..hhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2nxh A 1003 KFLVIAGPNAIESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLEYGVKALRKVKEEFGLKITTDIHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAVNVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGYNNLVVDFRSLPIMKQWAKVIYDATHSVQLPGGLGDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDAPTALPLSQLEGIIEAILEIREVASKYYETI 1264
                                  1012      1022      1032      1042      1052      1062      1072      1082      1092      1102      1112      1122      1132      1142      1152      1162      1172      1182      1192      1202      1212      1222      1232      1242      1252      1262  


Chain B from PDB  Type:PROTEIN  Length:262
 aligned with KDSA_AQUAE | O66496 from UniProtKB/Swiss-Prot  Length:267

    Alignment length:262
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262  
          KDSA_AQUAE      3 KFLVIAGPCAIESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLEYGVKALRKVKEEFGLKITTDIHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAVNVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGYNNLVVDFRSLPIMKQWAKVIYDATHSVQLPGGLGDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDASTQLPLSQLEGIIEAILEIREVASKYYETI  264
               SCOP domains d2nxhb_ B: 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase)                                                                                                                                                                                          SCOP domains
               CATH domains 2nxhB00 B:2003-2264 Aldolase class I                                                                                                                                                                                                                                   CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.....hhhhhhhhhhhhhhhhhhh..eeeeee.................hhhhhhhhhhhhhhhhh.eeeee..hhhhhhhhhh...eeeehhhhh.hhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhhh....eeeee..ee.....ee...hhhhhhh...eeeee.hhh.ee........ee...hhhhhhhhhhhhh..eeeeeee.hhhhh..hhhhhee..hhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2nxh B 2003 KFLVIAGPNAIESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLEYGVKALRKVKEEFGLKITTDIHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAVNVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGYNNLVVDFRSLPIMKQWAKVIYDATHSVQLPGGLGDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDAPTALPLSQLEGIIEAILEIREVASKYYETI 2264
                                  2012      2022      2032      2042      2052      2062      2072      2082      2092      2102      2112      2122      2132      2142      2152      2162      2172      2182      2192      2202      2212      2222      2232      2242      2252      2262  


Chain C from PDB  Type:PROTEIN  Length:262
 aligned with KDSA_AQUAE | O66496 from UniProtKB/Swiss-Prot  Length:267

    Alignment length:262
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262  
          KDSA_AQUAE      3 KFLVIAGPCAIESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLEYGVKALRKVKEEFGLKITTDIHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAVNVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGYNNLVVDFRSLPIMKQWAKVIYDATHSVQLPGGLGDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDASTQLPLSQLEGIIEAILEIREVASKYYETI  264
               SCOP domains d2nxhc_ C: 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase)                                                                                                                                                                                          SCOP domains
               CATH domains 2nxhC00 C:3003-3264 Aldolase class I                                                                                                                                                                                                                                   CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.....hhhhhhhhhhhhhhhhhhh...eeeee.................hhhhhhhhhhhhhhhhh.eeeee..hhhhhhhhh....eeeehhhhh.hhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhhh....eeeee..ee.....ee...hhhhhhh...eeeee.hhh.ee........ee...hhhhhhhhhhhhh..eeeeeee.hhhhh.......ee..hhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2nxh C 3003 KFLVIAGPNAIESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLEYGVKALRKVKEEFGLKITTDIHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAVNVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGYNNLVVDFRSLPIMKQWAKVIYDATHSVQLPGGLGDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDAPTALPLSQLEGIIEAILEIREVASKYYETI 3264
                                  3012      3022      3032      3042      3052      3062      3072      3082      3092      3102      3112      3122      3132      3142      3152      3162      3172      3182      3192      3202      3212      3222      3232      3242      3252      3262  


Chain D from PDB  Type:PROTEIN  Length:262
 aligned with KDSA_AQUAE | O66496 from UniProtKB/Swiss-Prot  Length:267

    Alignment length:262
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262  
          KDSA_AQUAE      3 KFLVIAGPCAIESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLEYGVKALRKVKEEFGLKITTDIHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAVNVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGYNNLVVDFRSLPIMKQWAKVIYDATHSVQLPGGLGDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDASTQLPLSQLEGIIEAILEIREVASKYYETI  264
               SCOP domains d2nxhd_ D: 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase)                                                                                                                                                                                          SCOP domains
               CATH domains 2nxhD00 D:4003-4264 Aldolase class I                                                                                                                                                                                                                                   CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.....hhhhhhhhhhhhhhhhhhh...eeeee................hhhhhhhhhhhhhhhhhh.eeeee..hhhhhhhhh....eeeehhhhh.hhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhhh....eeeee..ee.....ee...hhhhhhh...eeeee.hhh.ee........ee...hhhhhhhhhhhhh..eeeee...hhhhh........hhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2nxh D 4003 KFLVIAGPNAIESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLEYGVKALRKVKEEFGLKITTDIHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAVNVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGYNNLVVDFRSLPIMKQWAKVIYDATHSVQLPGGLGDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDAPTALPLSQLEGIIEAILEIREVASKYYETI 4264
                                  4012      4022      4032      4042      4052      4062      4072      4082      4092      4102      4112      4122      4132      4142      4152      4162      4172      4182      4192      4202      4212      4222      4232      4242      4252      4262  


Chain E from PDB  Type:PROTEIN  Length:259
 aligned with KDSA_AQUAE | O66496 from UniProtKB/Swiss-Prot  Length:267

    Alignment length:262
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262  
          KDSA_AQUAE      3 KFLVIAGPCAIESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLEYGVKALRKVKEEFGLKITTDIHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAVNVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGYNNLVVDFRSLPIMKQWAKVIYDATHSVQLPGGLGDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDASTQLPLSQLEGIIEAILEIREVASKYYETI  264
               SCOP domains d2nxhe_ E: 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase)                                                                                                                                                                                          SCOP domains
               CATH domains 2nxhE00 E:1003-1264 Aldolase class I                                                                                                                                                                                                                                   CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.....hhhhhhhhhhhhhhhhhhh..eeeeee................hhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhh....eeeehhhhh.hhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhhh....eeeee..ee.....ee...hhhhhhh...eeeee.hhh.ee....---.ee...hhhhhhhhhhhhh..eeeeeee.hhhhh.......ee..hhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2nxh E 1003 KFLVIAGPNAIESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLEYGVKALRKVKEEFGLKITTDIHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAVNVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGYNNLVVDFRSLPIMKQWAKVIYDATHSVQLPGGL---SGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDAPTALPLSQLEGIIEAILEIREVASKYYETI 1264
                                  1012      1022      1032      1042      1052      1062      1072      1082      1092      1102      1112      1122      1132      1142      1152      1162      1172      1182      1192|   | 1202      1212      1222      1232      1242      1252      1262  
                                                                                                                                                                                                                       1193   |                                                                   
                                                                                                                                                                                                                           1197                                                                   


Chain F from PDB  Type:PROTEIN  Length:262
 aligned with KDSA_AQUAE | O66496 from UniProtKB/Swiss-Prot  Length:267

    Alignment length:262
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262  
          KDSA_AQUAE      3 KFLVIAGPCAIESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLEYGVKALRKVKEEFGLKITTDIHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAVNVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGYNNLVVDFRSLPIMKQWAKVIYDATHSVQLPGGLGDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDASTQLPLSQLEGIIEAILEIREVASKYYETI  264
               SCOP domains d2nxhf_ F: 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase)                                                                                                                                                                                          SCOP domains
               CATH domains 2nxhF00 F:2003-2264 Aldolase class I                                                                                                                                                                                                                                   CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.....hhhhhhhhhhhhhhhhhhh...eeeee................hhhhhhhhhhhhhhhhhh.eeeee..hhhhhhhhh....eeeehhhhh.hhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhhh....eeeee..ee.....ee...hhhhhhh...eeeee.....ee........ee...hhhhhhhhhhhhh..eeeeeee.hhhhh.......ee..hhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2nxh F 2003 KFLVIAGPNAIESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLEYGVKALRKVKEEFGLKITTDIHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAVNVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGYNNLVVDFRSLPIMKQWAKVIYDATHSVQLPGGLGDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDAPTALPLSQLEGIIEAILEIREVASKYYETI 2264
                                  2012      2022      2032      2042      2052      2062      2072      2082      2092      2102      2112      2122      2132      2142      2152      2162      2172      2182      2192      2202      2212      2222      2232      2242      2252      2262  


Chain G from PDB  Type:PROTEIN  Length:262
 aligned with KDSA_AQUAE | O66496 from UniProtKB/Swiss-Prot  Length:267

    Alignment length:262
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262  
          KDSA_AQUAE      3 KFLVIAGPCAIESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLEYGVKALRKVKEEFGLKITTDIHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAVNVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGYNNLVVDFRSLPIMKQWAKVIYDATHSVQLPGGLGDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDASTQLPLSQLEGIIEAILEIREVASKYYETI  264
               SCOP domains d2nxhg_ G: 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase)                                                                                                                                                                                          SCOP domains
               CATH domains 2nxhG00 G:3003-3264 Aldolase class I                                                                                                                                                                                                                                   CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.....hhhhhhhhhhhhhhhhhhh...eeeee.................hhhhhhhhhhhhhhhhh.eeeee..hhhhhhhhhh...eeeehhhhh.hhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhhh....eeeee..ee.....ee...hhhhhhh...eeeee.hhh.ee........ee...hhhhhhhhhhhhh..eeeeeee.hhhhh..hhhhhee..hhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2nxh G 3003 KFLVIAGPNAIESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLEYGVKALRKVKEEFGLKITTDIHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAVNVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGYNNLVVDFRSLPIMKQWAKVIYDATHSVQLPGGLGDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDAPTALPLSQLEGIIEAILEIREVASKYYETI 3264
                                  3012      3022      3032      3042      3052      3062      3072      3082      3092      3102      3112      3122      3132      3142      3152      3162      3172      3182      3192      3202      3212      3222      3232      3242      3252      3262  


Chain H from PDB  Type:PROTEIN  Length:256
 aligned with KDSA_AQUAE | O66496 from UniProtKB/Swiss-Prot  Length:267

    Alignment length:262
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262  
          KDSA_AQUAE      3 KFLVIAGPCAIESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLEYGVKALRKVKEEFGLKITTDIHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAVNVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGYNNLVVDFRSLPIMKQWAKVIYDATHSVQLPGGLGDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDASTQLPLSQLEGIIEAILEIREVASKYYETI  264
               SCOP domains d2nxhh_ H: 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase)                                                                                                                                                                                          SCOP domains
               CATH domains 2nxhH00 H:4003-4264 Aldolase class I                                                                                                                                                                                                                                   CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.....hhhhhhhhhhhhhhhhhhh..eeeeee.................hhhhhhhhhhhhhhhhh.eeeee..hhhhhhhhhh...eeeehhhhh.hhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhhh....eeeee..ee.....ee...hhhhhhh...eeeee.hhhhh...------..hhhhhhhhhhhhhhhh..eeeeeee.hhhhh..hhhhhee..hhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2nxh H 4003 KFLVIAGPNAIESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLEYGVKALRKVKEEFGLKITTDIHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAVNVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGYNNLVVDFRSLPIMKQWAKVIYDATHSVQLPG------GGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDAPTALPLSQLEGIIEAILEIREVASKYYETI 4264
                                  4012      4022      4032      4042      4052      4062      4072      4082      4092      4102      4112      4122      4132      4142      4152      4162      4172      4182        |-     |4202      4212      4222      4232      4242      4252      4262  
                                                                                                                                                                                                                     4191   4198                                                                  


Chain I from PDB  Type:PROTEIN  Length:262
 aligned with KDSA_AQUAE | O66496 from UniProtKB/Swiss-Prot  Length:267

    Alignment length:262
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262  
          KDSA_AQUAE      3 KFLVIAGPCAIESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLEYGVKALRKVKEEFGLKITTDIHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAVNVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGYNNLVVDFRSLPIMKQWAKVIYDATHSVQLPGGLGDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDASTQLPLSQLEGIIEAILEIREVASKYYETI  264
               SCOP domains d2nxhi_ I: 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase)                                                                                                                                                                                          SCOP domains
               CATH domains 2nxhI00 I:1003-1264 Aldolase class I                                                                                                                                                                                                                                   CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.....hhhhhhhhhhhhhhhhhhh..eeeeee.................hhhhhhhhhhhhhhhhh.eeeee..hhhhhhhhhh...eeeehhhhh.hhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhhh....eeeee..ee.....ee...hhhhhhhh..eeeee.hhh.ee........ee...hhhhhhhhhhhhh..eeeeeee.hhhhh.......ee..hhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2nxh I 1003 KFLVIAGPNAIESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLEYGVKALRKVKEEFGLKITTDIHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAVNVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGYNNLVVDFRSLPIMKQWAKVIYDATHSVQLPGGLGDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDAPTALPLSQLEGIIEAILEIREVASKYYETI 1264
                                  1012      1022      1032      1042      1052      1062      1072      1082      1092      1102      1112      1122      1132      1142      1152      1162      1172      1182      1192      1202      1212      1222      1232      1242      1252      1262  


Chain J from PDB  Type:PROTEIN  Length:255
 aligned with KDSA_AQUAE | O66496 from UniProtKB/Swiss-Prot  Length:267

    Alignment length:262
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262  
          KDSA_AQUAE      3 KFLVIAGPCAIESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLEYGVKALRKVKEEFGLKITTDIHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAVNVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGYNNLVVDFRSLPIMKQWAKVIYDATHSVQLPGGLGDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDASTQLPLSQLEGIIEAILEIREVASKYYETI  264
               SCOP domains d2nxhj_ J: 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase)                                                                                                                                                                                          SCOP domains
               CATH domains 2nxhJ00 J:2003-2264 Aldolase class I                                                                                                                                                                                                                                   CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.....hhhhhhhhhhhhhhhhhhh..eeeeee.................hhhhhhhhhhhhhhhhh.eeeee..hhhhhhhhhh...eeeehhhhh.hhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhhh....eeeee..ee.....ee...hhhhhhh...eeeee.hhhhh...-------.hhhhhhhhhhhhhhhh..eeeeeee.hhhhh..hhhhhee..hhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2nxh J 2003 KFLVIAGPNAIESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLEYGVKALRKVKEEFGLKITTDIHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAVNVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGYNNLVVDFRSLPIMKQWAKVIYDATHSVQLPG-------GMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDAPTALPLSQLEGIIEAILEIREVASKYYETI 2264
                                  2012      2022      2032      2042      2052      2062      2072      2082      2092      2102      2112      2122      2132      2142      2152      2162      2172      2182        |-      2202      2212      2222      2232      2242      2252      2262  
                                                                                                                                                                                                                     2191    2199                                                                 


Chain K from PDB  Type:PROTEIN  Length:262
 aligned with KDSA_AQUAE | O66496 from UniProtKB/Swiss-Prot  Length:267

    Alignment length:262
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262  
          KDSA_AQUAE      3 KFLVIAGPCAIESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLEYGVKALRKVKEEFGLKITTDIHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAVNVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGYNNLVVDFRSLPIMKQWAKVIYDATHSVQLPGGLGDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDASTQLPLSQLEGIIEAILEIREVASKYYETI  264
               SCOP domains d2nxhk_ K: 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase)                                                                                                                                                                                          SCOP domains
               CATH domains 2nxhK00 K:3003-3264 Aldolase class I                                                                                                                                                                                                                                   CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.....hhhhhhhhhhhhhhhhhhh...eeeee.................hhhhhhhhhhhhhhhh..eeeee..hhhhhhhhhh...eeeehhhhh.hhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhhh....eeeee..ee.....ee...hhhhhhh...eeeee.....eeeeee..eeee...hhhhhhhhhhhhh..eeeeeee.hhhhh.......ee..hhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2nxh K 3003 KFLVIAGPNAIESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLEYGVKALRKVKEEFGLKITTDIHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAVNVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGYNNLVVDFRSLPIMKQWAKVIYDATHSVQLPGGLGDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDAPTALPLSQLEGIIEAILEIREVASKYYETI 3264
                                  3012      3022      3032      3042      3052      3062      3072      3082      3092      3102      3112      3122      3132      3142      3152      3162      3172      3182      3192      3202      3212      3222      3232      3242      3252      3262  


Chain L from PDB  Type:PROTEIN  Length:262
 aligned with KDSA_AQUAE | O66496 from UniProtKB/Swiss-Prot  Length:267

    Alignment length:262
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262  
          KDSA_AQUAE      3 KFLVIAGPCAIESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLEYGVKALRKVKEEFGLKITTDIHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAVNVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGYNNLVVDFRSLPIMKQWAKVIYDATHSVQLPGGLGDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDASTQLPLSQLEGIIEAILEIREVASKYYETI  264
               SCOP domains d2nxhl_ L: 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase)                                                                                                                                                                                          SCOP domains
               CATH domains 2nxhL00 L:4003-4264 Aldolase class I                                                                                                                                                                                                                                   CATH domains
           Pfam domains (1) DAHP_synth_1-2nxhL01 L:4003-4259                                                                                                                                                                                                                                 ----- Pfam domains (1)
           Pfam domains (2) DAHP_synth_1-2nxhL02 L:4003-4259                                                                                                                                                                                                                                 ----- Pfam domains (2)
           Pfam domains (3) DAHP_synth_1-2nxhL03 L:4003-4259                                                                                                                                                                                                                                 ----- Pfam domains (3)
           Pfam domains (4) DAHP_synth_1-2nxhL04 L:4003-4259                                                                                                                                                                                                                                 ----- Pfam domains (4)
           Pfam domains (5) DAHP_synth_1-2nxhL05 L:4003-4259                                                                                                                                                                                                                                 ----- Pfam domains (5)
           Pfam domains (6) DAHP_synth_1-2nxhL06 L:4003-4259                                                                                                                                                                                                                                 ----- Pfam domains (6)
           Pfam domains (7) DAHP_synth_1-2nxhL07 L:4003-4259                                                                                                                                                                                                                                 ----- Pfam domains (7)
           Pfam domains (8) DAHP_synth_1-2nxhL08 L:4003-4259                                                                                                                                                                                                                                 ----- Pfam domains (8)
           Pfam domains (9) DAHP_synth_1-2nxhL09 L:4003-4259                                                                                                                                                                                                                                 ----- Pfam domains (9)
          Pfam domains (10) DAHP_synth_1-2nxhL10 L:4003-4259                                                                                                                                                                                                                                 ----- Pfam domains (10)
          Pfam domains (11) DAHP_synth_1-2nxhL11 L:4003-4259                                                                                                                                                                                                                                 ----- Pfam domains (11)
          Pfam domains (12) DAHP_synth_1-2nxhL12 L:4003-4259                                                                                                                                                                                                                                 ----- Pfam domains (12)
         Sec.struct. author ..eeeee.....hhhhhhhhhhhhhhhhhhh...eeeee.................hhhhhhhhhhhhhhhhh.eeeee..hhhhhhhhh....eeeehhhhh.hhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhhh....eeeee..ee.....ee...hhhhhhh...eeeee.hhh.ee........ee...hhhhhhhhhhhhh..eeeeeee.hhhhh..hhhhhee..hhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2nxh L 4003 KFLVIAGPNAIESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLEYGVKALRKVKEEFGLKITTDIHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAVNVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGYNNLVVDFRSLPIMKQWAKVIYDATHSVQLPGGLGDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDAPTALPLSQLEGIIEAILEIREVASKYYETI 4264
                                  4012      4022      4032      4042      4052      4062      4072      4082      4092      4102      4112      4122      4132      4142      4152      4162      4172      4182      4192      4202      4212      4222      4232      4242      4252      4262
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 12)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Architecture: Alpha-Beta Barrel (2994)
(-)
Topology: TIM Barrel (2806)
(-)
Homologous Superfamily: Aldolase class I (887)
(-)
Aquifex aeolicus. Organism_taxid: 63363. (20)
1a2nxhA00A:1003-1264
1b2nxhB00B:2003-2264
1c2nxhC00C:3003-3264
1d2nxhD00D:4003-4264
1e2nxhF00F:2003-2264
1f2nxhG00G:3003-3264
1g2nxhI00I:1003-1264
1h2nxhK00K:3003-3264
1i2nxhL00L:4003-4264
1j2nxhE00E:1003-1264
1k2nxhH00H:4003-4264
1l2nxhJ00J:2003-2264

(-) Pfam Domains  (1, 12)

Asymmetric Unit
(-)
Clan: TIM_barrel (694)
(-)
Family: DAHP_synth_1 (46)
(-)
Aquifex aeolicus (17)
1aDAHP_synth_1-2nxhL01L:4003-4259
1bDAHP_synth_1-2nxhL02L:4003-4259
1cDAHP_synth_1-2nxhL03L:4003-4259
1dDAHP_synth_1-2nxhL04L:4003-4259
1eDAHP_synth_1-2nxhL05L:4003-4259
1fDAHP_synth_1-2nxhL06L:4003-4259
1gDAHP_synth_1-2nxhL07L:4003-4259
1hDAHP_synth_1-2nxhL08L:4003-4259
1iDAHP_synth_1-2nxhL09L:4003-4259
1jDAHP_synth_1-2nxhL10L:4003-4259
1kDAHP_synth_1-2nxhL11L:4003-4259
1lDAHP_synth_1-2nxhL12L:4003-4259

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L   (KDSA_AQUAE | O66496)
molecular function
    GO:0008676    3-deoxy-8-phosphooctulonate synthase activity    Catalysis of the reaction: D-arabinose 5-phosphate + H(2)O + phosphoenolpyruvate = 8-phospho-3-deoxy-D-manno-oct-2-ulosonate + 2 H(+) + phosphate.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0009058    biosynthetic process    The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
    GO:0019294    keto-3-deoxy-D-manno-octulosonic acid biosynthetic process    The chemical reactions and pathways resulting in the formation of keto-3-deoxy-D-manno-octulosonic acid, an acidic sugar present in lipopolysaccharides of the outer membranes of some Gram-negative bacteria.
    GO:0009103    lipopolysaccharide biosynthetic process    The chemical reactions and pathways resulting in the formation of lipopolysaccharides, any of a group of related, structurally complex components of the outer membrane of Gram-negative bacteria.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  2nxh
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  KDSA_AQUAE | O66496
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  2.5.1.55
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  KDSA_AQUAE | O66496
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KDSA_AQUAE | O66496: 1fwn 1fws 1fwt 1fww 1fx6 1fxp 1fxq 1fy6 1jcx 1jcy 1lrn 1lro 1lrq 1pck 1pcw 1pe1 1t8x 1t96 1t99 1zha 1zji 2a21 2a2i 2ef9 2nwr 2nws 2nx1 2nx3 2nxg 2nxi 3e0i 3e12

(-) Related Entries Specified in the PDB File

2nxg STRUCTURAL AND MECHANISTIC CHANGES ALONG AN ENGINEERED PATH FROM METALLO TO NON-METALLO KDO8P SYNTHASE
2nxi STRUCTURAL AND MECHANISTIC CHANGES ALONG AN ENGINEERED PATH FROM METALLO TO NON-METALLO KDO8P SYNTHASE
2nxk STRUCTURAL AND MECHANISTIC CHANGES ALONG AN ENGINEERED PATH FROM METALLO TO NON-METALLO KDO8P SYNTHASE