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(-) Description

Title :  CRYSTAL STRUCTURE OF PROTEIN AF1396 FROM ARCHAEOGLOBUS FULGIDUS, PFAM DUF98
 
Authors :  J. B. Bonanno, M. Dickey, K. T. Bain, J. Adams, V. Sridhar, S. Wasserman, J. M. Sauder, S. K. Burley, S. C. Almo, New York Sgx Research Center Structural Genomics (Nysgxrc)
Date :  14 Nov 06  (Deposition) - 21 Nov 06  (Release) - 24 Oct 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Keywords :  Structural Genomics, Unknown Function, Psi-2, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. B. Bonanno, M. Dickey, K. T. Bain, J. Adams, V. Sridhar, S. Wasserman D. Smith, J. M. Sauder, S. K. Burley, S. C. Almo
Crystal Structure Of Hypothetical Protein O28875 From Archaeoglobus Fulgidus
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: MODIFIED PET26
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: ARCHAEOGLOBUS FULGIDUS
    Organism Taxid: 2234

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): AB    
Biological Unit 2 (1x):   CD  
Biological Unit 3 (1x):     EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2NWI)

(-) Sites  (0, 0)

(no "Site" information available for 2NWI)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2NWI)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Glu A:117 -Glu A:118

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2NWI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2NWI)

(-) Exons   (0, 0)

(no "Exon" information available for 2NWI)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:160
 aligned with O28875_ARCFU | O28875 from UniProtKB/TrEMBL  Length:162

    Alignment length:160
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160
         O28875_ARCFU     1 MNAIHRILMTTDGSITAIIEAVTQKKVEVETLEQKIIRADRELAELLEIDEGDEVNYRVVYLRANGEIYAKAISFTPLKRLENSFREDLMRADIPIGKIMRKHNIEARREIRWSRVEEADLALAKELGIADRRVISRNYNIIHRGKVLINITEFFPMERF 160
               SCOP domains d2nwia1 A:1-160 Hypothetical protein AF1396                                                                                                                      SCOP domains
               CATH domains 2nwiA00 A:1-160 Chorismate lyase                                                                                                                                 CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh..hhhhhhhhhhh..eeeeeeeeeeee.hhhhhhhhh.....eeeeeeeeeee..eeeeeeeeeee.hhhhhhhhhhhhh...hhhhhhhhh....eeeeeeeeeee.hhhhhhhhh....eeeeeeeeeee..eeeeeeeeeee.hhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2nwi A   1 LNAIHRILMTTDGSITAIIEAVTQKKVEVETLEQKIIRADRELAELLEIDEGDEVNYRVVYLRANGEIYAKAISFTPLKRLENSFREDLMRADIPIGKIMRKHNIEARREIRWSRVEEADLALAKELGIADRRVISRNYNIIHRGKVLINITEFFPMERF 160
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160


Chain B from PDB  Type:PROTEIN  Length:153
 aligned with O28875_ARCFU | O28875 from UniProtKB/TrEMBL  Length:162

    Alignment length:160
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160
         O28875_ARCFU     1 MNAIHRILMTTDGSITAIIEAVTQKKVEVETLEQKIIRADRELAELLEIDEGDEVNYRVVYLRANGEIYAKAISFTPLKRLENSFREDLMRADIPIGKIMRKHNIEARREIRWSRVEEADLALAKELGIADRRVISRNYNIIHRGKVLINITEFFPMERF 160
               SCOP domains d2nwib_ B: automated matches                                                                                                                                     SCOP domains
               CATH domains 2nwiB00 B:1-160 Chorismate lyase                                                                                                                                 CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh..hhhhhhhhhhh...eeeeeeeeeee.hhhhhhhhh.....eeeeeeeeeee..eeeeeeeeeee.hhhhhhhhhhh-------hhhhhhh....eeeeeeeeeee.hhhhhhhhh....eeeeeeeeeee..eeeeeeeeeee.hhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2nwi B   1 LNAIHRILMTTDGSITAIIEAVTQKKVEVETLEQKIIRADRELAELLEIDEGDEVNYRVVYLRANGEIYAKAISFTPLKRLENSFREDL-------GKIMRKHNIEARREIRWSRVEEADLALAKELGIADRRVISRNYNIIHRGKVLINITEFFPMERF 160
                                    10        20        30        40        50        60        70        80        |-      |100       110       120       130       140       150       160
                                                                                                                   89      97                                                               


Chain C from PDB  Type:PROTEIN  Length:160
 aligned with O28875_ARCFU | O28875 from UniProtKB/TrEMBL  Length:162

    Alignment length:160
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160
         O28875_ARCFU     1 MNAIHRILMTTDGSITAIIEAVTQKKVEVETLEQKIIRADRELAELLEIDEGDEVNYRVVYLRANGEIYAKAISFTPLKRLENSFREDLMRADIPIGKIMRKHNIEARREIRWSRVEEADLALAKELGIADRRVISRNYNIIHRGKVLINITEFFPMERF 160
               SCOP domains d2nwic_ C: automated matches                                                                                                                                     SCOP domains
               CATH domains 2nwiC00 C:1-160 Chorismate lyase                                                                                                                                 CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh..hhhhhhhhhhh...eeeeeeeeeee.hhhhhhhhh.....eeeeeeeeeee..eeeeeeeeeee.hhhhhhhhhhhhhh..hhhhhhhhh....eeeeeeeeeee.hhhhhhhhh....eeeeeeeeeee..eeeeeeeeeee.hhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2nwi C   1 LNAIHRILMTTDGSITAIIEAVTQKKVEVETLEQKIIRADRELAELLEIDEGDEVNYRVVYLRANGEIYAKAISFTPLKRLENSFREDLMRADIPIGKIMRKHNIEARREIRWSRVEEADLALAKELGIADRRVISRNYNIIHRGKVLINITEFFPMERF 160
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160


Chain D from PDB  Type:PROTEIN  Length:160
 aligned with O28875_ARCFU | O28875 from UniProtKB/TrEMBL  Length:162

    Alignment length:160
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160
         O28875_ARCFU     1 MNAIHRILMTTDGSITAIIEAVTQKKVEVETLEQKIIRADRELAELLEIDEGDEVNYRVVYLRANGEIYAKAISFTPLKRLENSFREDLMRADIPIGKIMRKHNIEARREIRWSRVEEADLALAKELGIADRRVISRNYNIIHRGKVLINITEFFPMERF 160
               SCOP domains d2nwid_ D: automated matches                                                                                                                                     SCOP domains
               CATH domains 2nwiD00 D:1-160 Chorismate lyase                                                                                                                                 CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh..hhhhhhhhhhh..eeeeeeeeeeee.hhhhhhhhh.....eeeeeeeeeee..eeeeeeeeeee....hhhhhhhhhhh..hhhhhhhhh....eeeeeeeeeee.hhhhhhhhh....eeeeeeeeeee..eeeeeeeeeee.hhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2nwi D   1 LNAIHRILMTTDGSITAIIEAVTQKKVEVETLEQKIIRADRELAELLEIDEGDEVNYRVVYLRANGEIYAKAISFTPLKRLENSFREDLMRADIPIGKIMRKHNIEARREIRWSRVEEADLALAKELGIADRRVISRNYNIIHRGKVLINITEFFPMERF 160
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160


Chain E from PDB  Type:PROTEIN  Length:160
 aligned with O28875_ARCFU | O28875 from UniProtKB/TrEMBL  Length:162

    Alignment length:160
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160
         O28875_ARCFU     1 MNAIHRILMTTDGSITAIIEAVTQKKVEVETLEQKIIRADRELAELLEIDEGDEVNYRVVYLRANGEIYAKAISFTPLKRLENSFREDLMRADIPIGKIMRKHNIEARREIRWSRVEEADLALAKELGIADRRVISRNYNIIHRGKVLINITEFFPMERF 160
               SCOP domains d2nwie_ E: automated matches                                                                                                                                     SCOP domains
               CATH domains 2nwiE00 E:1-160 Chorismate lyase                                                                                                                                 CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh..hhhhhhhhhhh...eeeeeeeeeee.hhhhhhhh......eeeeeeeeeee..eeeeeeeeeee....hhhhhhhhhh...hhhhhhhhh....eeeeeeeeeee.hhhhhhhhh....eeeeeeeeeee..eeeeeeeeeee.hhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2nwi E   1 LNAIHRILMTTDGSITAIIEAVTQKKVEVETLEQKIIRADRELAELLEIDEGDEVNYRVVYLRANGEIYAKAISFTPLKRLENSFREDLMRADIPIGKIMRKHNIEARREIRWSRVEEADLALAKELGIADRRVISRNYNIIHRGKVLINITEFFPMERF 160
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160


Chain F from PDB  Type:PROTEIN  Length:159
 aligned with O28875_ARCFU | O28875 from UniProtKB/TrEMBL  Length:162

    Alignment length:159
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151         
         O28875_ARCFU     2 NAIHRILMTTDGSITAIIEAVTQKKVEVETLEQKIIRADRELAELLEIDEGDEVNYRVVYLRANGEIYAKAISFTPLKRLENSFREDLMRADIPIGKIMRKHNIEARREIRWSRVEEADLALAKELGIADRRVISRNYNIIHRGKVLINITEFFPMERF 160
               SCOP domains d2nwif_ F: automated matches                                                                                                                                    SCOP domains
               CATH domains 2nwiF00 F:2-160 Chorismate lyase                                                                                                                                CATH domains
           Pfam domains (1) -------DUF98-2nwiF01 F:9-160                                                                                                                                    Pfam domains (1)
           Pfam domains (2) -------DUF98-2nwiF02 F:9-160                                                                                                                                    Pfam domains (2)
           Pfam domains (3) -------DUF98-2nwiF03 F:9-160                                                                                                                                    Pfam domains (3)
           Pfam domains (4) -------DUF98-2nwiF04 F:9-160                                                                                                                                    Pfam domains (4)
           Pfam domains (5) -------DUF98-2nwiF05 F:9-160                                                                                                                                    Pfam domains (5)
           Pfam domains (6) -------DUF98-2nwiF06 F:9-160                                                                                                                                    Pfam domains (6)
         Sec.struct. author hhhhhhhhhh..hhhhhhhhhhh...eeeeeeeeeee.hhhhhhhhh.....eeeeeeeeeee..eeeeeeeeeee.hhhhhhhhhhhhhh..hhhhhhhhh....eeeeeeeeeee.hhhhhhhhh....eeeeeeeeeee..eeeeeeeeeee.hhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2nwi F   2 NAIHRILMTTDGSITAIIEAVTQKKVEVETLEQKIIRADRELAELLEIDEGDEVNYRVVYLRANGEIYAKAISFTPLKRLENSFREDLMRADIPIGKIMRKHNIEARREIRWSRVEEADLALAKELGIADRRVISRNYNIIHRGKVLINITEFFPMERF 160
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 6)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 6)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 6)

Asymmetric Unit
(-)
Clan: Chor_lyase (11)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2NWI)

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  Cis Peptide Bonds
    Glu A:117 - Glu A:118   [ RasMol ]  
 
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  2nwi
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