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(-) Description

Title :  STRUCTURAL STUDIES ON PLASMODIUM VIVAX MEROZOITE SURFACE PROTEIN-1
 
Authors :  J. J. Babon, W. D. Morgan, G. Kelly, J. F. Eccleston, J. Feeney, A. A. Holder
Date :  29 Oct 06  (Deposition) - 20 Mar 07  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Egf-Like Domain, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. J. Babon, W. D. Morgan, G. Kelly, J. F. Eccleston, J. Feeney, A. A. Holder
Structural Studies On Plasmodium Vivax Merozoite Surface Protein-1
Mol. Biochem. Parasitol. V. 153 31 2007
PubMed-ID: 17343930  |  Reference-DOI: 10.1016/J.MOLBIOPARA.2007.01.015
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - MEROZOITE SURFACE PROTEIN 1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET-30XA/LIC
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: C-TERMINAL DOMAIN, RESIDUES 1-90
    Gene: MSP1
    Organism Scientific: PLASMODIUM VIVAX (STRAIN BELEM)
    Organism Taxid: 31273
    Strain: BELEM

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2NPR)

(-) Sites  (0, 0)

(no "Site" information available for 2NPR)

(-) SS Bonds  (5, 5)

NMR Structure
No.Residues
1A:8 -A:19
2A:31 -A:42
3A:50 -A:63
4A:57 -A:73
5A:75 -A:89

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2NPR)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2NPR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2NPR)

(-) Exons   (0, 0)

(no "Exon" information available for 2NPR)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:90
 aligned with Q2I7F0_PLAVI | Q2I7F0 from UniProtKB/TrEMBL  Length:1746

    Alignment length:90
                                  1644      1654      1664      1674      1684      1694      1704      1714      1724
        Q2I7F0_PLAVI   1635 TMSSEHTCIDTNVPDNAACYRYLDGTEEWRCLLTFKEEGGKCVPASNVTCKDNNGGCAPEAECKMTDSNKIVCKCTKEGSEPLFEGVFCS 1724
               SCOP domains d2npra1 A:1-46                                d2npra2 A:47-90                              SCOP domains
               CATH domains 2nprA01 A:1-52 Laminin                              2nprA02 A:53-90 Laminin                CATH domains
               Pfam domains ------EGF_MSP1_1-2nprA02 A:7-43            ------EGF_3-2nprA01 A:50-89                   - Pfam domains
         Sec.struct. author ................eeee.......eeee...eee....eee................eeeee.....eeeee.....ee......ee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                2npr A    1 TMSSEHTCIDTNVPDNAACYRYLDGTEEWRCLLTFKEEGGKCVPASNVTCKDNNGGCAPEAECKMTDSNKIVCKCTKEGSEPLFEGVFCS   90
                                    10        20        30        40        50        60        70        80        90


Chain A from PDB  Type:PROTEIN  Length:90
 aligned with Q8I1L1_PLAVI | Q8I1L1 from UniProtKB/TrEMBL  Length:1769

    Alignment length:90
                                  1667      1677      1687      1697      1707      1717      1727      1737      1747
        Q8I1L1_PLAVI   1658 TMSSEHTCIDTNVPDNAACYRYLDGTEEWRCLLTFKEEGGKCVPASNVTCKDNNGGCAPEAECKMTDSNKIVCKCTKEGSEPLFEGVFCS 1747
               SCOP domains d2npra1 A:1-46                                d2npra2 A:47-90                              SCOP domains
               CATH domains 2nprA01 A:1-52 Laminin                              2nprA02 A:53-90 Laminin                CATH domains
               Pfam domains ------EGF_MSP1_1-2nprA02 A:7-43            ------EGF_3-2nprA01 A:50-89                   - Pfam domains
         Sec.struct. author ................eeee.......eeee...eee....eee................eeeee.....eeeee.....ee......ee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                2npr A    1 TMSSEHTCIDTNVPDNAACYRYLDGTEEWRCLLTFKEEGGKCVPASNVTCKDNNGGCAPEAECKMTDSNKIVCKCTKEGSEPLFEGVFCS   90
                                    10        20        30        40        50        60        70        80        90
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

NMR Structure
(-)
Class: Small proteins (3458)

(-) CATH Domains  (1, 2)

NMR Structure
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (2, 2)

NMR Structure
(-)
Clan: EGF (60)

(-) Gene Ontology  (3, 6)

NMR Structure(hide GO term definitions)
Chain A   (Q2I7F0_PLAVI | Q2I7F0)
biological process
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Chain A   (Q8I1L1_PLAVI | Q8I1L1)
biological process
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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