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Asym./Biol. Unit (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF CRYPTOSPORIDIUM PARVUM 14-3-3 PROTEIN IN COMPLEX WITH PEPTIDE

Authors :   A. Dong, J. Lew, G. Wasney, H. Ren, L. Lin, A. Hassanali, W. Qiu, Y. Zhao, D M. Vedadi, I. Koeieradzki, A. M. Edwards, C. H. Arrowsmith, J. Weigelt M. Sundstrom, A. Bochkarev, R. Hui, S. Brokx, Structural Genomics C (Sgc)

Date :   27 Oct 06 (Deposition) - 07 Nov 06 (Release) - 22 Feb 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.52

Chains :   Asym./Biol. Unit : A,B,X,Y

Keywords :   Cell Regulator Protein 14-3-3, Cryptosporidium Parvum, Structural Genomics, Structural Genomics Consortium, Sgc, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. J. Brokx, A. K. Wernimont, A. Dong, G. A. Wasney, Y. H. Lin, J. Lew, M. Vedadi, W. H. Lee, R. Hui
Characterization Of 14-3-3 Proteins From Cryptosporidium Parvum.
Plos One V. 6 14827 2011
PubMed-ID: 21853016 | Reference-DOI: 10.1371/JOURNAL.PONE.0014827

Molecule 1 - 14-3-3 DOMAIN CONTAINING PROTEIN
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	P15-TEV-LIC DERIVED FROM PET15
	Expression System Strain	:	BL21 ROSETTA-R3
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	CGD3_1290
	Organism Scientific	:	CRYPTOSPORIDIUM PARVUM
	Organism Taxid	:	5807

Molecule 2 - CONSENSUS PEPTIDE FOR 14-3-3 PROTEINS
	Chains	:	X, Y
	Engineered	:	YES
	Synthetic	:	YES

		1	2	3	4
Asymmetric/Biological Unit	:	A	B	X	Y

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 2)

No.	Name	Count	Type	Full Name
1	SEP	2	Mod. Amino Acid	PHOSPHOSERINE

(no "Site" information available for 2NPM)

(no "SS Bond" information available for 2NPM)

(no "Cis Peptide Bond" information available for 2NPM)

(no "SAP(SNP)/Variant" information available for 2NPM)

(no "PROSITE Motif" information available for 2NPM)

(no "Exon" information available for 2NPM)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:237
 aligned with Q5CUW0_CRYPI | Q5CUW0 from UniProtKB/TrEMBL  Length:273

    Alignment length:239
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249         
        Q5CUW0_CRYPI     20 MSDSVNARESNVYMAKLAEQAERYDEMAKYMKDVVEARQESEELTVEERNLLSVAYKNAVGSRRSSWRIISSVEQKEHSRNAEDASKMCGKYRSKVEAELTDICNDILTMLDKHLIPTATSPDSKVFYFKMKGDYHRYISEFSTGDSKQSSAEDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMAIEQLDKLSEDCYKDSTLIMQLLRDNLTLWTA  258
               SCOP domains d2npma_ A: automated matches                                                                                                                                                                                                                    SCOP domains
               CATH domains 2npmA00 A:21-259  [code=1.20.190.20, no   name defined]                                                                                                                                                                                         CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh...--..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2npm A   21 MSDSVNARESNVYMAKLAEQAERYDEMAKYMKDVVEARQE--ELTVEERNLLSVAYKNAVGSRRSSWRIISSVEQKEHSRNAEDASKMCGKYRSKVEAELTDICNDILTMLDKHLIPTATSPDSKVFYFKMKGDYHRYISEFSTGDSKQSSAEDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMAIEQLDKLSEDCYKDSTLIMQLLRDNLTLWTA  259
                                    30        40        50        60  |     70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250         
                                                                  60 63

Chain B from PDB  Type:PROTEIN  Length:235
 aligned with Q5CUW0_CRYPI | Q5CUW0 from UniProtKB/TrEMBL  Length:273

    Alignment length:236
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252      
        Q5CUW0_CRYPI     23 SVNARESNVYMAKLAEQAERYDEMAKYMKDVVEARQESEELTVEERNLLSVAYKNAVGSRRSSWRIISSVEQKEHSRNAEDASKMCGKYRSKVEAELTDICNDILTMLDKHLIPTATSPDSKVFYFKMKGDYHRYISEFSTGDSKQSSAEDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMAIEQLDKLSEDCYKDSTLIMQLLRDNLTLWTA  258
               SCOP domains d2npmb_ B: automated matches                                                                                                                                                                                                                 SCOP domains
               CATH domains 2npmB00 B:24-259  [code=1.20.190.20,  no name defined]                                                                                                                                                                                       CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.-....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2npm B   24 SVNARESNVYMAKLAEQAERYDEMAKYMKDVVEARQ-SEELTVEERNLLSVAYKNAVGSRRSSWRIISSVEQKEHSRNAEDASKMCGKYRSKVEAELTDICNDILTMLDKHLIPTATSPDSKVFYFKMKGDYHRYISEFSTGDSKQSSAEDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMAIEQLDKLSEDCYKDSTLIMQLLRDNLTLWTA  259
                                    33        43        53     | |63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253      
                                                              59 |                                                                                                                                                                                                      
                                                                61

Chain X from PDB  Type:PROTEIN  Length:6
                                       
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ...... Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                2npm X 1002 RAIsLP 1007
                               |  
                            1005-SEP

Chain Y from PDB  Type:PROTEIN  Length:6
                                       
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ...... Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                2npm Y 1002 RAIsLP 1007
                               |  
                               |  
                            1005-SEP

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

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Superfamilies( (-)

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Families(

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Protein Domains( (-)

)

Organisms( (-)

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Class: All alpha proteins (14657)

Fold: alpha-alpha superhelix (690)

Superfamily: 14-3-3 protein (60)

Family: 14-3-3 protein (60)

Protein domain: automated matches (43)

Cryptosporidium parvum [TaxId: 5807] (1)

1a	d2npma_	A:
1b	d2npmb_	B:

Asymmetric/Biological Unit

Classes(

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Architectures( (-)

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Topologies( (-)

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Homologous Superfamilies( (-)

)

Organisms( (-)

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Class: Mainly Alpha (13335)

Architecture: Up-down Bundle (3216)

Topology: Delta-Endotoxin; domain 1 (33)

Homologous Superfamily: [code=1.20.190.20, no name defined] (28)

Cryptosporidium parvum. Organism_taxid: 5807. (1)

1a	2npmB00	B:24-259
1b	2npmA00	A:21-259

(no "Pfam Domain" information available for 2NPM)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (Q5CUW0_CRYPI | Q5CUW0)

molecular function
	GO:0019904		protein domain specific binding		Interacting selectively and non-covalently with a specific domain of a protein.

Asymmetric/Biological Unit
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Description

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Ligands, Modified Residues, Ions (1, 2)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

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Exons (0, 0)

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