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(-) Description

Title :  HADDOCK MODEL OF FERREDOXIN AND [FEFE] HYDROGENASE COMPLEX
 
Authors :  S. Rumpel, J. Siebel, C. Fares, E. Reijerse, W. Lubitz
Date :  13 Mar 15  (Deposition) - 24 Jun 15  (Release) - 05 Aug 15  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (4x)
NMR Structure *:  A,B  (1x)
Keywords :  Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Rumpel, J. F. Siebel, M. Diallo, C. Fares, E. J. Reijerse, W. Lubitz
Structural Insight Into The Complex Of Ferredoxin And [Fefe Hydrogenase From Chlamydomonas Reinhardtii.
Chembiochem V. 16 1663 2015
PubMed-ID: 26010059  |  Reference-DOI: 10.1002/CBIC.201500130

(-) Compounds

Molecule 1 - FE-HYDROGENASE
    Chains: A
    EC Number: 1.18.99.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector: PET21B
    Gene: HYD1, HYD1, HYDA, HYDA1, CHLREDRAFT_183963
    Organism Scientific: CHLAMYDOMONAS REINHARDTII
    Organism Taxid: 3055
    Synonym: IRON HYDROGENASE, IRON-HYDROGENASE HYDA1
 
Molecule 2 - FERREDOXIN, CHLOROPLASTIC
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector: PET21B
    Gene: PETF
    Organism Scientific: CHLAMYDOMONAS REINHARDTII
    Organism Taxid: 3055

 Structural Features

(-) Chains, Units

  12
NMR Structure (4x): AB
NMR Structure * (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

NMR Structure (2, 2)
No.NameCountTypeFull Name
1FES1Ligand/IonFE2/S2 (INORGANIC) CLUSTER
2SF41Ligand/IonIRON/SULFUR CLUSTER
NMR Structure * (2, 2)
No.NameCountTypeFull Name
1FES1Ligand/IonFE2/S2 (INORGANIC) CLUSTER
2SF41Ligand/IonIRON/SULFUR CLUSTER

(-) Sites  (2, 2)

NMR Structure (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:130 , PRO A:131 , CYS A:185 , LYS A:188 , CYS A:377 , CYS A:381BINDING SITE FOR RESIDUE SF4 A 501
2AC2SOFTWAREPRO B:34 , TYR B:35 , SER B:36 , CYS B:37 , CYS B:42 , CYS B:45 , CYS B:75BINDING SITE FOR RESIDUE FES B 101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2N0S)

(-) Cis Peptide Bonds  (1, 4)

NMR Structure
No.ModelResidues
11, 2, 3, 4Leu A:123 -Pro A:124

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2N0S)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2N0S)

(-) Exons   (0, 0)

(no "Exon" information available for 2N0S)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:407
                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh........eeeeeehhhhhhhhhhhhh......hhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhhhhhhhhh....ee...hhhhhhhhhhh...hhhhh....hhhhhhhhhhhhhhhhhhh.hhh.eeeeeee..hhhhhhhh.............eeeehhhhhhhhhhhh.hhhhh.......................hhhhhhhhhhhhhhhh........eee..eeeeeeeeeee.....hhhhhhhhhh..........eeee.....eeeeeeeeeeehhhhhhhhhhhhhh......eeeee..................hhhhhhhhh..hhhhhhh..hhhhhhhhhhhhhhh.....hhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2n0s A  25 LSHVQQALAELAKPKDDPTRKHVCVQVAPAVRVAIAETLGLAPGATTPKQLAEGLRRLGFDEVFDTLFGADLTIMEEGSELLHRLTEHLEAEPLPMFTSCCPGWIAMLEKSYPDLIPYVSSCKSPQMMLAAMVKSYLAEKKGIAPKDMVMVSIMPCTRKQSEADRDWFCVDTLRQLDHVITTVELGNIFKERGINLAELPEGEWDNPMGVGSGAGVLFGTTGGVMEAALRTAYELFTGTPLPRLSLSEVRGMDGIKETNITMVPAPGSKFEELLKHRAAGPLAWDGGAGFTSEDGRGGITLRVAVANGLGNAKKLITKMQAGEAKYDFVEIMACPAGCVGGGGQPRSTDKAITQKRQAALYNLDEKSTLRRSHENPSIRELYDTYLGEPLGHKAHELLHTHYVAGGV 450
                                    34        44        54        64        74        84        94       104       114||     129       139       149       159       169       179       189       199||     212       222       232       242       252       262       272       282       292       302       323       333       343       353       363       373       383       393       403       413       423       433       443       
                                                                                                                    115|                                                                            200|                                                                                                        311|                                                                                                                               
                                                                                                                     121                                                                             204                                                                                                         323                                                                                                                               


Chain B from PDB  Type:PROTEIN  Length:94
                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..eeeeee.....hhhhhhhhhh...........hhh.eeee....eee......hhhhhh...ee...eee...eeee...hhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                 2n0s B   1 YKVTLKTPSGDKTIECPADTYILDAAEEAGLDLPYSCRAGACSSCAGKVAAGTVDQSDQSFLDDAQMGNGFVLTCVAYPTSDCTIQTHQEEALY  94
                                    10        20        30        40        50        60        70        80        90
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2N0S)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2N0S)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2N0S)

(-) Gene Ontology  (10, 13)

NMR Structure(hide GO term definitions)

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    Leu A:123 - Pro A:124   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FER_CHLRE | P07839: 1fct 2mh7
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        Q9FYU1_CHLRE | Q9FYU1: 3lx4 4r0v

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