1E70 - JenaLib

Asymmetric Unit (23, 23)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLN M:39 , HIS M:141 , ASN M:186 , GLN M:187 , TYR M:330 , GLU M:409 , TRP M:457 , GLU M:464 , PHE M:465 , PHE M:473 , HOH M:2344 , HOH M:2758	BINDING SITE FOR RESIDUE G2F M 999
02	AC2	SOFTWARE	HIS M:56 , ASP M:70	BINDING SITE FOR RESIDUE ZN M1502
03	AC3	SOFTWARE	GLU M:153 , ARG M:205 , HOH M:2224 , HOH M:2760 , HOH M:2761 , HOH M:2762 , HOH M:2763	BINDING SITE FOR RESIDUE SO4 M1503
04	AC4	SOFTWARE	LYS M:108 , ARG M:111 , HOH M:2220 , HOH M:2295 , HOH M:2764 , HOH M:2765	BINDING SITE FOR RESIDUE SO4 M1504
05	AC5	SOFTWARE	ARG M:259 , GLN M:333 , LEU M:357 , SO4 M:1510 , HOH M:2347 , HOH M:2766 , HOH M:2768	BINDING SITE FOR RESIDUE SO4 M1505
06	AC6	SOFTWARE	GLN M:7 , GLU M:8 , ASN M:9 , HOH M:2770 , HOH M:2771 , HOH M:2772 , HOH M:2773 , HOH M:2774	BINDING SITE FOR RESIDUE SO4 M1506
07	AC7	SOFTWARE	HIS M:270 , ALA M:273 , ARG M:277 , HOH M:2775 , HOH M:2776 , HOH M:2778	BINDING SITE FOR RESIDUE SO4 M1507
08	AC8	SOFTWARE	ARG M:109 , VAL M:113 , GLU M:173 , HOH M:2779 , HOH M:2780 , HOH M:2781	BINDING SITE FOR RESIDUE SO4 M1508
09	AC9	SOFTWARE	ASN M:60 , HIS M:66 , NAG M:961 , HOH M:2782	BINDING SITE FOR RESIDUE SO4 M1509
10	BC1	SOFTWARE	ARG M:194 , ARG M:259 , SO4 M:1505 , HOH M:2347 , HOH M:2355 , HOH M:2783 , HOH M:2784 , HOH M:2785	BINDING SITE FOR RESIDUE SO4 M1510
11	BC2	SOFTWARE	ARG M:269 , ASN M:316 , LEU M:317 , HOH M:2385 , HOH M:2482 , HOH M:2487 , HOH M:2786 , HOH M:2787 , HOH M:2788	BINDING SITE FOR RESIDUE GOL M1511
12	BC3	SOFTWARE	ILE M:50 , PHE M:54 , ARG M:57 , GLN M:146 , GLN M:149 , PRO M:203 , TYR M:215 , HOH M:2299 , HOH M:2789	BINDING SITE FOR RESIDUE GOL M1512
13	BC4	SOFTWARE	HIS M:247 , GLY M:249 , GLU M:280 , GLN M:297 , ILE M:298 , HOH M:2340 , HOH M:2399 , HOH M:2404 , HOH M:2731 , HOH M:2790 , HOH M:2791	BINDING SITE FOR RESIDUE GOL M1513
14	BC5	SOFTWARE	THR M:134 , NAG M:953 , MAN M:954 , HOH M:2270 , HOH M:2737 , HOH M:2792 , HOH M:2794	BINDING SITE FOR RESIDUE GOL M1514
15	BC6	SOFTWARE	ASP M:18 , ALA M:19 , ASN M:21 , SER M:24 , HOH M:2049 , HOH M:2703 , HOH M:2704	BINDING SITE FOR CHAIN M OF SUGAR BOUND TO ASN M 21 RESIDUES 901 TO 901
16	BC7	SOFTWARE	ASN M:60 , SER M:213 , SO4 M:1509 , HOH M:2115 , HOH M:2752 , HOH M:2753	BINDING SITE FOR CHAIN M OF SUGAR BOUND TO ASN M 60 RESIDUES 961 TO 961
17	BC8	SOFTWARE	ASN M:90 , SER M:500 , HOH M:2705 , HOH M:2706 , HOH M:2709	BINDING SITE FOR CHAIN M OF SUGAR BOUND TO ASN M 90 RESIDUES 911 TO 911
18	BC9	SOFTWARE	SER M:207 , ASN M:218 , THR M:221 , HOH M:2710 , HOH M:2711 , HOH M:2712 , HOH M:2713 , HOH M:2714 , HOH M:2716	BINDING SITE FOR CHAIN M OF SUGAR BOUND TO ASN M 218 RESIDUES 921 TO 923
19	CC1	SOFTWARE	LYS M:165 , LEU M:240 , ASN M:244 , HOH M:2382 , HOH M:2717	BINDING SITE FOR CHAIN M OF SUGAR BOUND TO ASN M 244 RESIDUES 931 TO 931
20	CC2	SOFTWARE	ASN M:265 , ASP M:268 , ASN M:316 , LYS M:319 , ALA M:362 , HOH M:2424 , HOH M:2481 , HOH M:2720 , HOH M:2721 , HOH M:2722 , HOH M:2723 , HOH M:2724 , HOH M:2725 , HOH M:2726 , HOH M:2728 , HOH M:2729	BINDING SITE FOR CHAIN M OF SUGAR BOUND TO ASN M 265 RESIDUES 941 TO 945
21	CC3	SOFTWARE	ILE M:129 , ASN M:292 , THR M:294 , GLN M:297 , ILE M:300 , GOL M:1514 , HOH M:2336 , HOH M:2338 , HOH M:2446 , HOH M:2453 , HOH M:2730 , HOH M:2731 , HOH M:2732 , HOH M:2734 , HOH M:2735 , HOH M:2737 , HOH M:2739 , HOH M:2741 , HOH M:2744 , HOH M:2745 , HOH M:2746 , HOH M:2747 , HOH M:2748 , HOH M:2749 , HOH M:2750 , HOH M:2751 , HOH M:2790	BINDING SITE FOR CHAIN M OF SUGAR BOUND TO ASN M 292 RESIDUES 951 TO 956
22	CC4	SOFTWARE	SER M:344 , ASN M:346 , MET M:351 , HOH M:2523	BINDING SITE FOR CHAIN M OF SUGAR BOUND TO ASN M 346 RESIDUES 971 TO 971
23	CC5	SOFTWARE	ASN M:482 , ASP M:485 , HOH M:2678 , HOH M:2682 , HOH M:2755	BINDING SITE FOR CHAIN M OF SUGAR BOUND TO ASN M 482 RESIDUES 991 TO 991

SS Bonds (3, 3)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 2)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain M from PDB  Type:PROTEIN  Length:499
 aligned with MYRA_SINAL | P29736 from UniProtKB/Swiss-Prot  Length:501

    Alignment length:499
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492         
           MYRA_SINAL     3 EITCQENLPFTCGNTDALNSSSFSSDFIFGVASSAYQIEGTIGRGLNIWDGFTHRYPNKSGPDHGNGDTTCDSFSYWQKDIDVLDELNATGYRFSIAWSRIIPRGKRSRGVNEKGIDYYHGLISGLIKKGITPFVTLFHWDLPQTLQDEYEGFLDPQIIDDFKDYADLCFEEFGDSVKYWLTINQLYSVPTRGYGSALDAPGRCSPTVDPSCYAGNSSTEPYIVAHHQLLAHAKVVDLYRKNYTHQGGKIGPTMITRWFLPYNDTDRHSIAATERMKEFFLGWFMGPLTNGTYPQIMIDTVGERLPSFSPEESNLVKGSYDFLGLNYYFTQYAQPSPNPVNSTNHTAMMDAGAKLTYINASGHYIGPLFEKDKADSTDNIYYYPKGIYSVMDYFKNKYYNPLIYVTENGISTPGDENRNQSMLDYTRIDYLCSHLCFLNKVIKEKDVNVKGYLAWALGDNYEFNKGFTVRFGLSYIDWNNVTDRDLKKSGQWYQSFISP 501
               SCOP domains d1e70m_ M: Plant beta-glucosidase (myrosinase)                                                                                                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains 1e70M00 M:3-501 Glycosidases                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................hhhhh....eeeee.hhhhhh.......hhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhh..eeeee.hhhhhh...hhhhh.hhhhhhhhhhhhhhhhhh..eeeee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eee.....hhhhhhhhh.......................hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eee.eeee.eeee....hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh...hhhhhhhhh.....eeeee..eeeeee..........hhhhhh.eeee..................hhhhh....hhhhhhhhhhhhhhh....eeeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee................................hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------GLYCOSYL_HYDROL-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GLYCOSYL_---------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1e70 M   3 EITCQENLPFTCGNTDALNSSSFSSDFIFGVASSAYQIEGTIGRGLNIWDGFTHRYPNKSGPDHGNGDTTCDSFSYWQKDIDVLDELNATGYRFSIAWSRIIPRGKRSRGVNEKGIDYYHGLISGLIKKGITPFVTLFHWDLPQTLQDEYEGFLDPQIIDDFKDYADLCFEEFGDSVKYWLTINQLYSVPTRGYGSALDAPGRCSPTVDPSCYAGNSSTEPYIVAHHQLLAHAKVVDLYRKNYTHQGGKIGPTMITRWFLPYNDTDRHSIAATERMKEFFLGWFMGPLTNGTYPQIMIDTVGERLPSFSPEESNLVKGSYDFLGLNYYFTQYAQPSPNPVNSTNHTAMMDAGAKLTYINASGHYIGPLFEKDKADSTDNIYYYPKGIYSVMDYFKNKYYNPLIYVTENGISTPGDENRNQSMLDYTRIDYLCSHLCFLNKVIKEKDVNVKGYLAWALGDNYEFNKGFTVRFGLSYIDWNNVTDRDLKKSGQWYQSFISP 501
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (1, 1)

Pfam Domains (0, 0)

Gene Ontology (8, 8)

Asymmetric Unit(hide GO term definitions)

Chain M (MYRA_SINAL | P29736)

molecular function
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0016798	hydrolase activity, acting on glycosyl bonds	Catalysis of the hydrolysis of any glycosyl bond.
	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	Catalysis of the hydrolysis of any O-glycosyl bond.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0019137	thioglucosidase activity	Catalysis of the reaction: a thioglucoside + H2O = a thiol + a sugar.
biological process
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
cellular component
	GO:0005773	vacuole	A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol.

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	Cis Peptide Bonds
		Ala M:202 - Pro M:203	[ RasMol ]
		Leu M:10 - Pro M:11	[ RasMol ]

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	1e70
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	MYRA_SINAL \| P29736
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	3.2.1.147
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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File

1dwa	STUDY ON RADIATION DAMAGE ON A CRYOCOOLED CRYSTAL. STRUCTURE PRIOR TO IRRADIATION
1dwf	STUDY ON RADIATION DAMAGE ON A CRYOCOOLED CRYSTAL. STRUCTURE AFTER IRRADIATION WITH 9.1*10E15 PHOTONS/MM2
1dwg	STUDY ON RADIATION DAMAGE ON A CRYOCOOLED CRYSTAL: STRUCTURE AFTER IRRADIATION WITH 18.2*10E15 PHOTONS/MM2.
1dwh	STUDY ON RADIATION DAMAGE ON A CRYOCOOLED CRYSTAL. STRUCTURE AFTER IRRADIATION WITH 27.2*10E15 PHOTONS/MM2
1dwi	STUDY ON RADIATION DAMAGE ON A CRYOCOOLED CRYSTAL. STRUCTURE AFTER IRRADIATION WITH 54.0*10E15 PHOTONS/MM2
1dwj	STUDY ON RADIATION DAMAGE ON A CRYOCOOLED CRYSTAL. REFINED STRUCTURE AFTER A RADIATION DOSE OF 54*10E15 PHOTONS/MM2
1e4m	MYROSINASE FROM SINAPIS ALBA
1e6q	MYROSINASE FROM SINAPIS ALBA WITH THE BOUND TRANSITION STATE ANALOGUE GLUCO-TETRAZOLE
1e6s	MYROSINASE FROM SINAPIS ALBA WITH BOUND GLUCO- HYDROXIMOLACTAM AND SULFATE
1e6x	MYROSINASE FROM SINAPIS ALBA WITH A BOUND TRANSITION STATE ANALOGUE, D-GLUCONO-1,5-LACTONE
1e71	MYROSINASE FROM SINAPIS ALBA WITH BOUND ASCORBATE
1e72	MYROSINASE FROM SINAPIS ALBA WITH BOUND GLUCO- HYDROXIMOLACTAM AND SULFATE OR ASCORBATE
1e73	2-F-GLUCOSYLATED MYROSINASE FROM SINAPIS ALBA WITH BOUND L-ASCORBATE
1myr	MYROSINASE FROM SINAPIS ALBA
1w9b	S. ALBA MYROSINASE IN COMPLEX WITH CARBA-GLUCOTROPAEOLIN
1w9d	S. ALBA MYROSINASE IN COMPLEX WITH S-ETHYL PHENYLACETOTHIOHYDROXIMATE-O-SULFATE
2wxd	A MICROMOLAR O-SULFATED THIOHYDROXIMATE INHIBITOR BOUND TO PLANT MYROSINASE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (9, 33)

Sites (23, 23)