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(-) Description

Title :  NMR STRUCTURE OF FBP28 WW2 MUTANT Y438R DN
 
Authors :  M. J. Macias, H. Scheraga, D. Sunol, T. Todorovski
Date :  04 Nov 14  (Deposition) - 03 Dec 14  (Release) - 21 Jan 15  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Melting, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  R. Zhou, G. G. Maisuradze, D. Sunol, T. Todorovski, M. J. Macias, Y. Xiao, H. A. Scheraga, C. Czaplewski, A. Liwo
Folding Kinetics Of Ww Domains With The United Residue Forc Field For Bridging Microscopic Motions And Experimental Measurements.
Proc. Natl. Acad. Sci. Usa V. 111 18243 2014
PubMed-ID: 25489078  |  Reference-DOI: 10.1073/PNAS.1420914111

(-) Compounds

Molecule 1 - TRANSCRIPTION ELONGATION REGULATOR 1
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    Expression System VectorPGAT2
    FragmentWW 2 DOMAIN RESIDUES 433-464
    GeneCA150, TAF2S, TCERG1
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymTATA BOX-BINDING PROTEIN-ASSOCIATED FACTOR 2S, TRANSCRIPTION FACTOR CA150

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x)A
NMR Structure * (1x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2MWF)

(-) Sites  (0, 0)

(no "Site" information available for 2MWF)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2MWF)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2MWF)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2MWF)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1WW_DOMAIN_1PS01159 WW/rsp5/WWP domain signature.TCRG1_HUMAN435-460  1A:435-460
NMR Structure * (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1WW_DOMAIN_1PS01159 WW/rsp5/WWP domain signature.TCRG1_HUMAN435-460  1A:435-460

(-) Exons   (1, 1)

NMR Structure (1, 1)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1bENST000002967021bENSE00001958061chr5:145826875-14582697197TCRG1_HUMAN1-20200--
1.2ENST000002967022ENSE00000875393chr5:145834619-145834844226TCRG1_HUMAN20-95760--
1.3ENST000002967023ENSE00000875394chr5:145836746-145836898153TCRG1_HUMAN96-146510--
1.4aENST000002967024aENSE00001026741chr5:145838447-145838900454TCRG1_HUMAN147-2981520--
1.6ENST000002967026ENSE00000875396chr5:145843114-145843356243TCRG1_HUMAN298-379820--
1.7ENST000002967027ENSE00000766804chr5:145847904-14584796663TCRG1_HUMAN379-400220--
1.8aENST000002967028aENSE00000766805chr5:145849107-145849307201TCRG1_HUMAN400-467681A:433-46432
1.9aENST000002967029aENSE00001126961chr5:145850199-145850311113TCRG1_HUMAN467-504380--
1.10ENST0000029670210ENSE00001126952chr5:145851051-14585113989TCRG1_HUMAN505-534300--
1.11bENST0000029670211bENSE00001126945chr5:145858056-145858216161TCRG1_HUMAN534-588550--
1.12ENST0000029670212ENSE00001126936chr5:145859418-14585947457TCRG1_HUMAN588-607200--
1.13aENST0000029670213aENSE00001126927chr5:145859591-14585965767TCRG1_HUMAN607-629230--
1.14cENST0000029670214cENSE00001126919chr5:145862155-145862290136TCRG1_HUMAN629-674460--
1.15ENST0000029670215ENSE00001126912chr5:145863103-14586319290TCRG1_HUMAN675-704300--
1.16cENST0000029670216cENSE00000766812chr5:145872483-145872601119TCRG1_HUMAN705-744400--
1.17ENST0000029670217ENSE00000766813chr5:145878099-145878249151TCRG1_HUMAN744-794510--
1.19bENST0000029670219bENSE00000766816chr5:145882938-145883102165TCRG1_HUMAN795-849550--
1.20aENST0000029670220aENSE00000766817chr5:145883387-145883569183TCRG1_HUMAN850-910610--
1.23bENST0000029670223bENSE00000766818chr5:145886591-145886770180TCRG1_HUMAN911-970600--
1.24cENST0000029670224cENSE00000766819chr5:145887436-14588751984TCRG1_HUMAN971-998280--
1.25ENST0000029670225ENSE00001082938chr5:145888708-145888808101TCRG1_HUMAN999-1032340--
1.27dENST0000029670227dENSE00001918127chr5:145890004-1458915241521TCRG1_HUMAN1032-1098670--

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:32
 aligned with TCRG1_HUMAN | O14776 from UniProtKB/Swiss-Prot  Length:1098

    Alignment length:32
                                   442       452       462  
          TCRG1_HUMAN   433 SEWTEYKTADGKTYYYNNRTLESTWEKPQELK 464
               SCOP domains -------------------------------- SCOP domains
               CATH domains -------------------------------- CATH domains
               Pfam domains -------------------------------- Pfam domains
         Sec.struct. author ...eeeee...eeeeee....eee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------- SAPs(SNPs)
                    PROSITE --WW_DOMAIN_1  PDB: A:435-46---- PROSITE
               Transcript 1 Exon 1.8a  PDB: A:433-464        Transcript 1
                 2mwf A 433 SEWTERKTADGKTYYYNNRTLESTWEKPQELK 464
                                   442       452       462  

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2MWF)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2MWF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2MWF)

(-) Gene Ontology  (12, 12)

NMR Structure(hide GO term definitions)
Chain A   (TCRG1_HUMAN | O14776)
molecular function
    GO:0001103    RNA polymerase II repressing transcription factor binding    Interacting selectively and non-covalently with an RNA polymerase II transcription repressing factor, a protein involved in negative regulation of transcription.
    GO:0001106    RNA polymerase II transcription corepressor activity    Interacting selectively and non-covalently with an RNA polymerase II repressing transcription factor and also with the RNA polymerase II basal transcription machinery in order to stop, prevent, or reduce the frequency, rate or extent of transcription. Cofactors generally do not bind DNA, but rather mediate protein-protein interactions between repressive transcription factors and the basal transcription machinery.
    GO:0070064    proline-rich region binding    Interacting selectively and non-covalently with a proline-rich region, i.e. a region that contains a high proportion of proline residues, in a protein.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0003713    transcription coactivator activity    Interacting selectively and non-covalently with a activating transcription factor and also with the basal transcription machinery in order to increase the frequency, rate or extent of transcription. Cofactors generally do not bind the template nucleic acid, but rather mediate protein-protein interactions between activating transcription factors and the basal transcription machinery.
biological process
    GO:0000122    negative regulation of transcription from RNA polymerase II promoter    Any process that stops, prevents, or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006366    transcription from RNA polymerase II promoter    The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0015629    actin cytoskeleton    The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes.
    GO:0005730    nucleolus    A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TCRG1_HUMAN | O147762dk7 2dod 2doe 2dof 2e71 2kiq 2kis 2mw9 2mwa 2mwb 2mwd 2mwe 2n4r 2n4s 2n4t 2n4u 2n4v 2n4w 2nnt 3hfh 3q1i 4fqg

(-) Related Entries Specified in the PDB File

2mw9 2mwa 2mwb 2mwd 2mwe