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(-) Description

Title :  MUSASHI1 RBD2, NMR
 
Authors :  T. Nagata, R. Kanno, Y. Kurihara, S. Uesugi, T. Imai, S. Sakakibara, H. Okano, M. Katahira
Date :  19 May 99  (Deposition) - 19 May 00  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Rna-Binding Domain, Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Nagata, R. Kanno, Y. Kurihara, S. Uesugi, T. Imai, S. Sakakibara, H. Okano, M. Katahira
Structure, Backbone Dynamics And Interactions With Rna Of The C-Terminal Rna-Binding Domain Of A Mouse Neural Rna-Binding Protein, Musashi1.
J. Mol. Biol. V. 287 315 1999
PubMed-ID: 10080895  |  Reference-DOI: 10.1006/JMBI.1999.2596
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROTEIN (MUSASHI1)
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Cell: BL21(DE3)
    Expression System Gene: PET3A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET3A
    Fragment: RNA-BINDING DOMAIN
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Other Details: PCR

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2MST)

(-) Sites  (0, 0)

(no "Site" information available for 2MST)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2MST)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 2MST)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:75
 aligned with MSI1H_MOUSE | Q61474 from UniProtKB/Swiss-Prot  Length:362

    Alignment length:75
                                   119       129       139       149       159       169       179     
          MSI1H_MOUSE   110 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 184
               SCOP domains d2msta_ A: Neural RNA-binding protein Musashi-1                             SCOP domains
               CATH domains 2mstA00 A:110-184  [code=3.30.70.330, no name defined]                      CATH domains
               Pfam domains --------------------------------------------------------------------------- Pfam domains
         Sec.struct. author eeeee.......hhhhhhhhhhh..eeeeeee..........eeeeee..hhhhhhhh............eeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------- Transcript
                 2mst A 110 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 184
                                   119       129       139       149       159       169       179
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2MST)

(-) Gene Ontology  (9, 9)

NMR Structure(hide GO term definitions)
Chain A   (MSI1H_MOUSE | Q61474)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0003676    nucleic acid binding    Interacting selectively and non-covalently with any nucleic acid.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0008266    poly(U) RNA binding    Interacting selectively and non-covalently with a sequence of uracil residues in an RNA molecule.
    GO:0003727    single-stranded RNA binding    Interacting selectively and non-covalently with single-stranded RNA.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0005844    polysome    A multiribosomal structure representing a linear array of ribosomes held together by messenger RNA. They represent the active complexes in cellular protein synthesis and are able to incorporate amino acids into polypeptides both in vivo and in vitro.

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  MSI1H_MOUSE | Q61474
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MSI1H_MOUSE | Q61474: 1uaw 2mss 2rs2

(-) Related Entries Specified in the PDB File

2mss