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(-) Description

Title :  AG(7-DEAZA)G FAPY MODIFIED DUPLEX
 
Authors :  L. Li, M. Stone
Date :  17 Mar 14  (Deposition) - 25 Feb 15  (Release) - 23 Dec 15  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B
NMR Structure *:  A,B  (1x)
Keywords :  Aflatoxin B1, Fapy, Formamidopyrimidine, Intercalation, Dna Adduct, Deoxyribonucleic Acid, Hydrogen Bond, Sequence Dependence, Ag(7- Deaza)G, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Li, K. L. Brown, R. Ma, M. P. Stone
Dna Sequence Modulates Geometrical Isomerism Of The Trans-8, 9-Dihydro-8-(2, 6-Diamino-4-Oxo-3, 4-Dihydropyrimid-5 Yl-Formamido)-9-Hydroxy Aflatoxin B1 Adduct.
Chem. Res. Toxicol. V. 28 225 2015
PubMed-ID: 25587868  |  Reference-DOI: 10.1021/TX5003832

(-) Compounds

Molecule 1 - DNA_(5'-D(*CP*TP*AP*AP*(FAG)P*(7GU)P*TP*TP*CP*A)-3')
    Chains: A
    Engineered: YES
    Synthetic: YES
 
Molecule 2 - DNA_(5'-D(*TP*GP*AP*AP*CP*CP*TP*TP*AP*G)-3')
    Chains: B
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
NMR Structure : AB
NMR Structure * (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

NMR Structure (2, 2)
No.NameCountTypeFull Name
17GU1Mod. Nucleotide7-DEAZA-2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
2FAG1Mod. Nucleotide[1',2'-DIDEOXY[2-AMINO-5-([9-HYDROXY-AFLATOXINB2-8-YL]-FORMYL-AMINO)-6-OXO-1,6-IHYDRO-PYRIMIDIN-4-YLAMINO]-RIBOFURANOSE]-5-MONOPHOSPHATE GROUP
NMR Structure * (2, 2)
No.NameCountTypeFull Name
17GU1Mod. Nucleotide7-DEAZA-2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
2FAG1Mod. Nucleotide[1',2'-DIDEOXY[2-AMINO-5-([9-HYDROXY-AFLATOXINB2-8-YL]-FORMYL-AMINO)-6-OXO-1,6-IHYDRO-PYRIMIDIN-4-YLAMINO]-RIBOFURANOSE]-5-MONOPHOSPHATE GROUP

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:DNA  Length:10
                                         
                  2mms A  1 CTAAxgTTCA 10
                                ||  10
                                ||    
                                5-FAG 
                                 6-7GU


Chain B from PDB  Type:DNA  Length:10
                                         
                  2mms B 11 TGAACCTTAG 20
                                    20
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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