2MMQ - JenaLib

Title :   SOLUTION STRUCTURE OF AGT FAPY MODIFIED DUPLEX

Authors :   L. Li, M. Stone

Date :   17 Mar 14 (Deposition) - 25 Feb 15 (Release) - 23 Dec 15 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A,B
NMR Structure *: A,B  (1x)

Keywords :   Aflatoxin B1, Fapy, Formamidopyrimidine, Intercalation, Dna Adduct, Deoxyribonucleic Acid, Hydrogen Bond, Sequence Dependence, Agt, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   L. Li, K. L. Brown, R. Ma, M. P. Stone
Dna Sequence Modulates Geometrical Isomerism Of The Trans-8, 9-Dihydro-8-(2, 6-Diamino-4-Oxo-3, 4-Dihydropyrimid-5 Yl-Formamido)-9-Hydroxy Aflatoxin B1 Adduct.
Chem. Res. Toxicol. V. 28 225 2015
PubMed-ID: 25587868 | Reference-DOI: 10.1021/TX5003832

Compounds

*Molecule 1 - DNA_(5'-D(CPTPAPAP(FAG)PTPTPTPCPA)-3')*
	Chains	:	A
	Engineered	:	YES
	Synthetic	:	YES

*Molecule 2 - DNA_(5'-D(TPGPAPAPAPCPTPTPAPG)-3')*
	Chains	:	B
	Engineered	:	YES
	Synthetic	:	YES

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 1)

NMR Structure (1, 1)

No.	Name	Count	Type	Full Name
1	FAG	1	Mod. Nucleotide	[1',2'-DIDEOXY[2-AMINO-5-([9-HYDROXY-AFLATOXINB2-8-YL]-FORMYL-AMINO)-6-OXO-1,6-IHYDRO-PYRIMIDIN-4-YLAMINO]-RIBOFURANOSE]-5-MONOPHOSPHATE GROUP

NMR Structure * (1, 1)

No.	Name	Count	Type	Full Name
1	FAG	1	Mod. Nucleotide	[1',2'-DIDEOXY[2-AMINO-5-([9-HYDROXY-AFLATOXINB2-8-YL]-FORMYL-AMINO)-6-OXO-1,6-IHYDRO-PYRIMIDIN-4-YLAMINO]-RIBOFURANOSE]-5-MONOPHOSPHATE GROUP

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

Sequences/Alignments

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:DNA  Length:10
                                         
                  2mmq A  1 CTAAxTTTCA 10
                                |   10
                                |     
                                5-FAG

Chain B from PDB  Type:DNA  Length:10
                                         
                  2mmq B 11 TGAAACTTAG 20
                                    20

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Classification and Annotation

SCOP Domains (0, 0)

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Gene Ontology (0, 0)

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