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(-) Description

Title :  NMR STUDIES OF N2-GUANINE ADDUCTS DERIVED FROM THE TUMORIGEN DIBENZO[A,L]PYRENE IN DNA: IMPACT OF ADDUCT STEREOCHEMISTRY, SIZE, AND LOCAL DNA STRUCTURE ON SOLUTION CONFORMATIONS
 
Authors :  F. A. Rodriguez, Z. Liu, C. H. Lin, S. Ding, Y. Cai, A. Kolbanovskiy, M. Kolbanovskiy, S. Amin, S. Broyde, N. E. Geacintov
Date :  20 Dec 13  (Deposition) - 02 Apr 14  (Release) - 09 Apr 14  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (5x)
NMR Structure *:  A,B  (1x)
Keywords :  Dna, 14S(-)-Trans-Anti-Db[A, L]P-N2-Dg, Dna Adduct (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. A. Rodriguez, Z. Liu, C. H. Lin, S. Ding, Y. Cai, A. Kolbanovskiy, M. Kolbanovskiy, S. Amin, S. Broyde, N. E. Geacintov
Nuclear Magnetic Resonance Studies Of An N(2)-Guanine Adduc Derived From The Tumorigen Dibenzo[A, L]Pyrene In Dna: Impac Of Adduct Stereochemistry, Size, And Local Dna Sequence On Solution Conformations.
Biochemistry V. 53 1827 2014
PubMed-ID: 24617538  |  Reference-DOI: 10.1021/BI4017044

(-) Compounds

Molecule 1 - DNA_(5'-D(*CP*CP*AP*TP*CP*GP*CP*TP*AP*CP*C)-3')
    Chains: A
    Engineered: YES
    Synthetic: YES
 
Molecule 2 - DNA_(5'-D(*GP*GP*TP*AP*GP*GP*AP*TP*GP*G)-3')
    Chains: B
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
NMR Structure (5x): AB
NMR Structure * (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
12QL1Ligand/Ion(11R,12R,13R)-11,12,13,14-TETRAHYDRONAPHTHO[1,2,3,4-PQR]TETRAPHENE-11,12,13-TRIOL
NMR Structure * (1, 1)
No.NameCountTypeFull Name
12QL1Ligand/Ion(11R,12R,13R)-11,12,13,14-TETRAHYDRONAPHTHO[1,2,3,4-PQR]TETRAPHENE-11,12,13-TRIOL

(-) Sites  (1, 1)

NMR Structure (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDC A:5 , DG A:6 , DC A:7 , DG B:16 , DG B:17BINDING SITE FOR RESIDUE 2QL A 101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2MIV)

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 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:11
                                          
                  2miv A  1 CCATCGCTACC 11
                                    10 


Chain B from PDB  Type:DNA  Length:10
                                         
                  2miv B 12 GGTAGGATGG 21
                                    21
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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 Related Entries

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(-) Related Entries Specified in the PDB File

2miw