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(-) Description

Title :  STRUCTURE OF EXOCYCLIC S,S N6,N6-(2,3-DIHYDROXY-1,4-BUTADIYL)-2'-DEOXYADENOSINE ADDUCT INDUCED BY 1,2,3,4-DIEPOXYBUTANE IN DNA
 
Authors :  E. A. Kowal, U. Seneviratne, S. Wickramaratne, K. E. Doherty, X. Cao, N. Tretyakova, M. P. Stone
Date :  05 Dec 13  (Deposition) - 28 May 14  (Release) - 04 Jun 14  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (8x)
NMR Structure *:  A,B  (1x)
Keywords :  B-Form Dna, 11-Mer, Deb Induced Adduct, Dhb-Da Adduct, N-Ras Codon 61 Sequence, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. A. Kowal, U. Seneviratne, S. Wickramaratne, K. E. Doherty, X. Cao, N. Tretyakova, M. P. Stone
Structures Of Exocyclic R, R- And S, S-N(6), N(6)-(2, 3-Dihydroxybutan-1, 4-Diyl)-2'- Deoxyadenosine Adducts Induced By 1, 2, 3, 4-Diepoxybutane.
Chem. Res. Toxicol. V. 27 805 2014
PubMed-ID: 24741991  |  Reference-DOI: 10.1021/TX400472P

(-) Compounds

Molecule 1 - 5'-D(*CP*GP*GP*AP*CP*(SDE)P*AP*GP*AP*AP*G)-3'
    Chains: A
    Engineered: YES
    Synthetic: YES
 
Molecule 2 - 5'-D(*CP*TP*TP*CP*TP*TP*GP*TP*CP*CP*G)-3'
    Chains: B
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
NMR Structure (8x): AB
NMR Structure * (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1SDE1Mod. Nucleotide(S,S)-N6,N6-(2,3-DIHYDROXY-1,4-BUTADIYL)-2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
NMR Structure * (1, 1)
No.NameCountTypeFull Name
1SDE1Mod. Nucleotide(S,S)-N6,N6-(2,3-DIHYDROXY-1,4-BUTADIYL)-2'-DEOXYADENOSINE-5'-MONOPHOSPHATE

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(-) Sequences/Alignments

NMR Structure
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Chain A from PDB  Type:DNA  Length:11
                                          
                  2mhz A  1 CGGACaAGAAG 11
                                 |  10 
                                 6-SDE 


Chain B from PDB  Type:DNA  Length:11
                                          
                  2mhz B 12 CTTCTTGTCCG 22
                                    21
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NMR Structure(hide GO term definitions)
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