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(-) Description

Title :  SOLUTION STRUCTURE OF ADF LIKE UNC-60A PROTEIN OF CAENORHABDITIS ELEGANS
 
Authors :  V. Shukla, R. Yadav, A. Kabra, D. Kumar, S. Ono, A. Arora
Date :  11 May 14  (Deposition) - 11 Jun 14  (Release) - 11 Jun 14  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (10x)
NMR Structure *:  A  (1x)
Keywords :  Adf/Cofilin Protein, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Shukla, R. Yadav, A. Jain, S. Tripathi, A. Kabra, D. Kumar, S. Ono, A. Arora
Nmr Structure And Backbone Dynamics Of Adf Like Unc-60A Protein From Caenorhabditis Elegans: Its Divergence From Conventional Adf/Cofilin
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ACTIN-DEPOLYMERIZING FACTOR 1, ISOFORMS A/B
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: K12
    Expression System Taxid: 562
    Expression System Variant: BL21(DE3)
    Expression System Vector: PETNH6
    Fragment: UNP RESIDUES 1-156
    Gene: UNC-60, C38C3.5
    Organism Common: ROUNDWORM
    Organism Scientific: CAENORHABDITIS ELEGANS
    Organism Taxid: 6239
    Synonym: UNCOORDINATED PROTEIN 60

 Structural Features

(-) Chains, Units

  1
NMR Structure (10x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2MP4)

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ADF_HPS51263 ADF-H domain profile.ADF1_CAEEL3-159  1A:3-156
NMR Structure * (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ADF_HPS51263 ADF-H domain profile.ADF1_CAEEL3-159  1A:3-156

(-) Exons   (0, 0)

(no "Exon" information available for 2MP4)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:165
 aligned with ADF1_CAEEL | Q07750 from UniProtKB/Swiss-Prot  Length:212

    Alignment length:204
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200    
           ADF1_CAEEL     1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKIDENKVIVEAAVTQDQLGITGDDYDDSSKAAFDKFVEDVKSRTDNLTDCRYAVFDFKFTCSRVGAGTSKMDKIIFLQICPDGASIKKKMVYASSAAAIKTSLGTGKILQFQVSDESEMSHKELLNNCPDNAPVRRRMLYASSVRALKASLGLESLFQVQASEMSDLDEKSVKS 204
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....ee.hhhhhhhhhhhh.......eeeeee..eeeeee.................hhhhhhhhhhhhhhhh.......eeeeeeeeeee.....eeeeeeeeeeee.....hhhhhhhhhhhhhhhhhhhh....eeeee.hhhhhhhhhhhh---------------------------------------hhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --ADF_H  PDB: A:3-156 UniProt: 3-159                                                                                                                           --------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2mp4 A   1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKIDENKVIVEAAVTQDQLGITGDDYDDSSKAAFDKFVEDVKSRTDNLTDCRYAVFDFKFTCSRVGAGTSKMDKIIFLQICPDGASIKKKMVYASSAAAIKTSLGTGKILQFQVSDESEMSHKELLN---------------------------------------KLGEKYGDH 165
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150     |   -         -         -         -     | 161    
                                                                                                                                                                                     156                                     157
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2MP4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2MP4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2MP4)

(-) Gene Ontology  (13, 13)

NMR Structure(hide GO term definitions)
Chain A   (ADF1_CAEEL | Q07750)
molecular function
    GO:0003779    actin binding    Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments.
    GO:0051015    actin filament binding    Interacting selectively and non-covalently with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits.
biological process
    GO:0030042    actin filament depolymerization    Disassembly of actin filaments by the removal of actin monomers from a filament.
    GO:0051014    actin filament severing    The process in which an actin filament is broken down into smaller filaments.
    GO:0009792    embryo development ending in birth or egg hatching    The process whose specific outcome is the progression of an embryo over time, from zygote formation until the end of the embryonic life stage. The end of the embryonic life stage is organism-specific and may be somewhat arbitrary; for mammals it is usually considered to be birth, for insects the hatching of the first instar larva from the eggshell.
    GO:0040011    locomotion    Self-propelled movement of a cell or organism from one location to another.
    GO:0071689    muscle thin filament assembly    The aggregation, arrangement and bonding together of proteins to form the actin-based thin filaments of myofibrils in striated muscle.
    GO:0030838    positive regulation of actin filament polymerization    Any process that activates or increases the frequency, rate or extent of actin polymerization.
    GO:0030240    skeletal muscle thin filament assembly    The aggregation, arrangement and bonding together of proteins to form the actin-based thin filaments of myofibrils in skeletal muscle.
cellular component
    GO:0015629    actin cytoskeleton    The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0005865    striated muscle thin filament    Filaments formed of actin and associated proteins; attached to Z discs at either end of sarcomeres in myofibrils.

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