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(-) Description

Title :  SOLUTION STRUCTURE OF N-TERMINAL DOMAIN OF HUMAN CONSERVED DOPAMINE NEUROTROPHIC FACTOR (CDNF)
 
Authors :  C. Latge, K. M. S. Cabral, D. Foguel, J. R. M. Pires, M. S. Almeida
Date :  15 Feb 12  (Deposition) - 20 Feb 13  (Release) - 22 May 13  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Nerve Growth Factor, Neurotrophic Factor, Intercellular Signaling Protein, Nerve Tissue Protein, Neuronal Growth-Associated, Hormone (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Latge, K. M. Cabral, M. S. Almeida, D. Foguel
(1)H-, (13)C- And (15)N-Nmr Assignment Of The N-Terminal Domain Of Human Cerebral Dopamine Neurotrophic Factor (Cdnf).
Biomol. Nmr Assign. V. 7 101 2013
PubMed-ID: 22528768  |  Reference-DOI: 10.1007/S12104-012-9388-8
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CEREBRAL DOPAMINE NEUROTROPHIC FACTOR
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: ROSETTA GAMI B (DE3)
    Expression System Taxid: 562
    Expression System Vector: PET25B
    Fragment: UNP RESIDUES 27-131
    Gene: CDNF, ARMETL1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ARMET-LIKE PROTEIN 1, CONSERVED DOPAMINE NEUROTROPHIC FACTOR

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2LPN)

(-) Sites  (0, 0)

(no "Site" information available for 2LPN)

(-) SS Bonds  (3, 3)

NMR Structure
No.Residues
1A:11 -A:98
2A:14 -A:87
3A:45 -A:56

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2LPN)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2LPN)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 2LPN)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:105
 aligned with CDNF_HUMAN | Q49AH0 from UniProtKB/Swiss-Prot  Length:187

    Alignment length:105
                                    36        46        56        66        76        86        96       106       116       126     
           CDNF_HUMAN    27 QEAGGRPGADCEVCKEFLNRFYKSLIDRGVNFSLDTIEKELISFCLDTKGKENRLCYYLGATKDAATKILSEVTRPMSVHMPAMKICEKLKKLDSQICELKYEKT 131
               SCOP domains --------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.hhhhhhhhhhhh.....hhhhhhhhhhhhh...hhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------- Transcript
                 2lpn A   1 QEAGGRPGADCEVCKEFLNRFYKSLIDRGVNFSLDTIEKELISFCLDTKGKENRLCYYLGATKDAATKILSEVTRPMSVHMPAMKICEKLKKLDSQICELKYEKT 105
                                    10        20        30        40        50        60        70        80        90       100
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2LPN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2LPN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2LPN)

(-) Gene Ontology  (2, 2)

NMR Structure(hide GO term definitions)
Chain A   (CDNF_HUMAN | Q49AH0)
molecular function
    GO:0008083    growth factor activity    The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CDNF_HUMAN | Q49AH0: 2w50 4bit

(-) Related Entries Specified in the PDB File

2w50 STRUCTURE SOLVED BY X-RAY CRYSTALLOGRAPHY. RECOMBINANT PROTEIN PRODUCED IN SPODOPTERA FRUGIPERDA. RELATED ID: 18269 RELATED DB: BMRB