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(-) Description

Title :  SOLUTION STRUCTURE OF CHR148 FROM CYTOPHAGA HUTCHINSONII, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET CHR148
 
Authors :  Y. Liu, D. Lee, C. Ciccosanti, L. Nair, B. Rost, T. Acton, R. Xiao, J. Ever G. Montelione, J. Prestegard, Northeast Structural Genomics Con (Nesg)
Date :  21 Jan 11  (Deposition) - 02 Mar 11  (Release) - 22 Feb 12  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Mixed Alpha-Beta Protein, Psi-Biology, Structural Genomics, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Liu, D. Lee, C. Ciccosanti, L. Nair, B. Rost, T. Acton, R. Xiao, J. Everett, G. Montelione, J. Prestegard
Solution Structure Of Chr148 From Cytophaga Hutchinsonii. Northeast Structural Genomics Consortium Target Chr148
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector: PET 21C
    Gene: CHU_3789
    Organism Scientific: CYTOPHAGA HUTCHINSONII
    Organism Taxid: 269798
    Strain: ATCC 33406 / NCIMB 9469

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2L8O)

(-) Sites  (0, 0)

(no "Site" information available for 2L8O)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2L8O)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2L8O)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2L8O)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2L8O)

(-) Exons   (0, 0)

(no "Exon" information available for 2L8O)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:144
 aligned with Q11NJ2_CYTH3 | Q11NJ2 from UniProtKB/TrEMBL  Length:137

    Alignment length:144
                                                                                                                                                                 137        
                                    11        21        31        41        51        61        71        81        91       101       111       121       131     |   -    
         Q11NJ2_CYTH3     2 GNKITVEVTVYAAIEKVWKYWNEPAHIMKWCQASPEWHVPAAQNDLKAGGTFTTTMAAKDGSMSFDFGGVYDQVKTNDLIEYTIGDGRKVRIVFTHTGDTTNIVESFDPEETNPRELQQSGWQAILNSFKSYTENN--------   -
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ----------AHSA1-2l8oA01 A:11-134                                                                                                      ---------- Pfam domains
         Sec.struct. author ...eeeeeee..hhhhhhhhhhhhhhhhhhh......eeeeee.......eeeeeee......eeeeeeeeeeee...eeeeee....eeeeeeee....eeeeeee......hhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2l8o A   1 GNKITVEVTVYAAIEKVWKYWNEPAHIMKWCQASPEWHVPAAQNDLKAGGTFTTTMAAKDGSMSFDFGGVYDQVKTNDLIEYTIGDGRKVRIVFTHTGDTTNIVESFDPEETNPRELQQSGWQAILNSFKSYTENNLEHHHHHH 144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2L8O)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2L8O)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: Bet_V_1_like (93)

(-) Gene Ontology  (1, 1)

NMR Structure(hide GO term definitions)
Chain A   (Q11NJ2_CYTH3 | Q11NJ2)
biological process
    GO:0006950    response to stress    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).

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  2l8o
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 Related Entries

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