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(-) Description

Title :  SOLUTION STRUCTURE AND DYNAMICS OF ADF FROM TOXOPLASMA GONDII (TGADF)
 
Authors :  P. P. Pathak, V. K. Shukla, R. Yadav, A. Jain, S. Srivastava, S. Tripathi S. V. S. R. K. Pulavarti, A. Arora
Date :  01 Dec 10  (Deposition) - 17 Aug 11  (Release) - 28 Dec 11  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (10x)
NMR Structure *:  A  (1x)
Keywords :  Adf/Cofilin, Tgadf, Actin Binding, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Yadav, P. P. Pathak, V. K. Shukla, A. Jain, S. Srivastava, S. Tripathi, S. V. S. R. K. Pulavarti, S. Mehta, L. D. Sibley, A. Arora
Solution Structure And Dynamics Of Adf From Toxoplasma Gondii
J. Struct. Biol. V. 176 97 2011
PubMed-ID: 21820516  |  Reference-DOI: 10.1016/J.JSB.2011.07.011

(-) Compounds

Molecule 1 - ACTIN DEPOLYMERIZING FACTOR, PUTATIVE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector: PET16B+
    Expression System Vector Type: VECTOR
    Organism Scientific: TOXOPLASMA GONDII
    Organism Taxid: 5811
    Synonym: TGADF

 Structural Features

(-) Chains, Units

  1
NMR Structure (10x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2L72)

(-) Sites  (0, 0)

(no "Site" information available for 2L72)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2L72)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2L72)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 2L72)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:118
 aligned with B9Q2C8_TOXGV | B9Q2C8 from UniProtKB/TrEMBL  Length:118

    Alignment length:118
                                    10        20        30        40        50        60        70        80        90       100       110        
         B9Q2C8_TOXGV     1 MASGMGVDENCVARFNELKIRKTVKWIVFKIENTKIVVEKDGKGNADEFRGALPANDCRFGVYDCGNKIQFVLWCPDNAPVKPRMTYASSKDALLKKLDGATAVALEAHEMGDLAPLA 118
               SCOP domains d2l72a_ A: automated matches                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eehhhhhhhhhhhh......eeeeeee..eeeeeeee.hhhhhhhhhh......eeeee....eeeeee.....hhhhhhhhhhhhhhhhhhhh.....eeee.......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 2l72 A   1 MASGMGVDENCVARFNELKIRKTVKWIVFKIENTKIVVEKDGKGNADEFRGALPANDCRFGVYDCGNKIQFVLWCPDNAPVKPRMTYASSKDALLKKLDGATAVALEAHEMGDLAPLA 118
                                    10        20        30        40        50        60        70        80        90       100       110
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2L72)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2L72)

(-) Gene Ontology  (4, 4)

NMR Structure(hide GO term definitions)
Chain A   (B9Q2C8_TOXGV | B9Q2C8)
molecular function
    GO:0003779    actin binding    Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments.
biological process
    GO:0030042    actin filament depolymerization    Disassembly of actin filaments by the removal of actin monomers from a filament.
cellular component
    GO:0015629    actin cytoskeleton    The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

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  2l72
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 Related Entries

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UniProtKB/TrEMBL
        B9Q2C8_TOXGV | B9Q2C8: 2mot

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