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(-) Description

Title :  THREE-DIMENSIONAL STRUCTURE OF A TRUNCATED PHOSPHORIBOSYLANTHRANILATE ISOMERASE (RESIDUES 255-384) FROM ESCHERICHIA COLI
 
Authors :  S. Setiyaputra, J. P. Mackay, W. M. Patrick
Date :  17 Jun 10  (Deposition) - 09 Mar 11  (Release) - 13 Jul 11  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Tim-Barrel, Tryptophan Biosynthesis, Protein Evolution, Subdomain, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. Setiyaputra, J. P. Mackay, W. M. Patrick
The Structure Of A Truncated Phosphoribosylanthranilate Isomerase Suggests A Unified Model For Evolution Of The (Beta Alpha)8 Barrel Fold
J. Mol. Biol. V. 408 291 2011
PubMed-ID: 21354426  |  Reference-DOI: 10.1016/J.JMB.2011.02.048
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TRYPTOPHAN BIOSYNTHESIS PROTEIN TRPCF
    ChainsA
    EC Number5.3.1.24
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBL21
    Expression System Taxid562
    Expression System VectorPWP107
    Expression System Vector TypeVECTOR
    GeneTRPC, B1262, JW1254
    Organism ScientificESCHERICHIA COLI
    Organism Taxid83333
    StrainK12
    SynonymN-(5'-PHOSPHO-RIBOSYL)ANTHRANILATE ISOMERASE, PRAI, TRPRAI

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x)A
NMR Structure * (1x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2KZH)

(-) Sites  (0, 0)

(no "Site" information available for 2KZH)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2KZH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2KZH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2KZH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2KZH)

(-) Exons   (0, 0)

(no "Exon" information available for 2KZH)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:134
 aligned with TRPC_ECOLI | P00909 from UniProtKB/Swiss-Prot  Length:453

    Alignment length:134
                                   264       274       284       294       304       314       324       334       344       354       364       374       384    
           TRPC_ECOLI   255 LGENKVCGLTRGQDAKAAYDAGAIYGGLIFVATSPRCVNVEQAQEVMAAAPLQYVGVFRNHDIADVVDKAKVLSLAAVQLHGNEEQLYIDTLREALPAHVAIWKALSVGETLPAREFQHVDKYVLDNGQGGSGQ 388
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --PRAI-2kzhA01 A:3-130                                                                                                            ---- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhh................hhhhhhhhh......eeeee...hhhhhhhhhhhh..eeeee.hhh.hhhhhhhhhhh....eeeeee...............eeee......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2kzh A   1 MGENKVCGLTRGQDAKAAYDAGAIYGGLIFVATSPRCVNVEQAQEVMAAAPLQYVGVFRNHDIADVVDKAKVLSLAAVQLHGNEEQLYIDTLREALPAHVAIWKALSVGETLPAREFQHVDKYVLDNGQGGAGS 134
                                    10        20        30        40        50        60        70        80        90       100       110       120       130    

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2KZH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2KZH)

(-) Pfam Domains  (1, 1)

NMR Structure

(-) Gene Ontology  (11, 11)

NMR Structure(hide GO term definitions)
Chain A   (TRPC_ECOLI | P00909)
molecular function
    GO:0016831    carboxy-lyase activity    Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0004425    indole-3-glycerol-phosphate synthase activity    Catalysis of the reaction: 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate = 1-(indol-3-yl)glycerol 3-phosphate + CO2 + H2O.
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
    GO:0004640    phosphoribosylanthranilate isomerase activity    Catalysis of the reaction: N-(5-phospho-beta-D-ribosyl)anthranilate = 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate.
biological process
    GO:0009073    aromatic amino acid family biosynthetic process    The chemical reactions and pathways resulting in the formation of aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan).
    GO:0008652    cellular amino acid biosynthetic process    The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0000162    tryptophan biosynthetic process    The chemical reactions and pathways resulting in the formation of tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid; tryptophan is synthesized from chorismate via anthranilate.
    GO:0006568    tryptophan metabolic process    The chemical reactions and pathways involving tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TRPC_ECOLI | P009091jcm 1pii

(-) Related Entries Specified in the PDB File

1pii CRYSTAL STRUCTURE OF THE FULL-LENGTH PHOSPHORYBOSILANTHRANILATE ISOMERASE (PRAI) FROM ESCHERICIA COLI RELATED ID: 17005 RELATED DB: BMRB