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(-) Description

Title :  SOLUTION STRUCTURE OF ADF/COFILIN (LDCOF) FROM LEISHMANIA DONOVANI
 
Authors :  P. P. Pathak, S. V. Pulavarti, A. Jain, A. A. Sahasrabuddhe, C. M. Gupta,
Date :  16 Mar 10  (Deposition) - 28 Jul 10  (Release) - 10 Nov 10  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (10x)
NMR Structure *:  A  (1x)
Keywords :  Adf/Cofilin, Leishmania Donovani, Hormone (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. P. Pathak, S. V. S. R. Pulavarti, A. Jain, A. A. Sahasrabuddhe, C. M. Gupta, A. Arora
Solution Structure And Dynamics Of Adf/Cofilin From Leishmania Donovani
J. Struct. Biol. V. 172 219 2010
PubMed-ID: 20627129  |  Reference-DOI: 10.1016/J.JSB.2010.07.001
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ACTIN SEVERING AND DYNAMICS REGULATORY PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21 DE3
    Expression System Taxid: 469008
    Expression System Vector: PET 21D
    Expression System Vector Type: VECTOR
    Gene: COFILIN
    Organism Scientific: LEISHMANIA DONOVANI
    Organism Taxid: 5661

 Structural Features

(-) Chains, Units

  1
NMR Structure (10x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

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(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:144
 aligned with Q2QKR1_LEIDO | Q2QKR1 from UniProtKB/TrEMBL  Length:142

    Alignment length:144
                                                                                                                                                                       142  
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140 |  
         Q2QKR1_LEIDO     1 MAISGVTLEESVRGAIDDLRMKKSRYVMMCIGADGKKIEVTEVGERSVNYTDLKEKFSTEKPCYVAFDFEYNDAGSKREKLILIQWIPDTARPREKMMYSASRDALSSVSEGYLPIQANDESGLDAEEIIRKVRLHRSVAAA--   -
               SCOP domains d2kvka_ A: automated matches                                                                                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ---------Cofilin_ADF-2kvkA01 A:10-134                                                                                                 ---------- Pfam domains
         Sec.struct. author ......eehhhhhhhhhhhhh....eeeeee.....eeeeeeee....hhhhhhhh.......eeeeeeeeee..eeeeeeeeeee.....hhhhhhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2kvk A   1 MAISGVTLEESVRGAIDDLRMKKSRYVMMCIGADGKKIEVTEVGERSVNYTDLKEKFSTEKPCYVAFDFEYNDAGSKREKLILIQWIPDTARPREKMMYSASRDALSSVSEGYLPIQANDESGLDAEEIIRKVRLHRSVAAALE 144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2KVK)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: ADF (44)

(-) Gene Ontology  (4, 4)

NMR Structure(hide GO term definitions)
Chain A   (Q2QKR1_LEIDO | Q2QKR1)
molecular function
    GO:0003779    actin binding    Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments.
biological process
    GO:0030042    actin filament depolymerization    Disassembly of actin filaments by the removal of actin monomers from a filament.
cellular component
    GO:0015629    actin cytoskeleton    The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

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