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(-) Description

Title :  SOLUTION NMR STRUCTURE OF A SECTION OF THE REPEAT DOMAIN OF THE TYPE III EFFECTOR PROTEIN PTHA
 
Authors :  J. L. Neves, M. L. Sforca, M. T. Murakami, C. E. Benedetti, A. C. Zeri
Date :  28 Oct 09  (Deposition) - 01 Sep 10  (Release) - 01 Sep 10  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (21x)
NMR Structure *:  A  (1x)
Keywords :  Ptha, 1. 5 Repeat Units, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. L. Neves, M. L. Sforca, M. T. Murakami, C. E. Benedetti, A. C. Zeri
An Nmr-Based Structural Model Of The Ptha Repeat Region Reveals A Tpr Fold That Would Account For Protein-Protein And Protein-Dna Interactions
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - AVIRULENCE PROTEIN
    Chains: A
    Engineered: YES
    Fragment: UNP RESIDUES 629-679
    Organism Common: CITRUS CANKER
    Organism Scientific: XANTHOMONAS AXONOPODIS PV. CITRI
    Organism Taxid: 92829
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1
NMR Structure (21x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2KQ5)

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:51
 aligned with Q8PRN6_XANAC | Q8PRN6 from UniProtKB/TrEMBL  Length:1126

    Alignment length:51
                                   638       648       658       668       678 
         Q8PRN6_XANAC   629 EQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALE 679
               SCOP domains --------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------- CATH domains
               Pfam domains Avirulence-2kq5A01 A:1-51                           Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------- Transcript
                 2kq5 A   1 EQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALE  51
                                    10        20        30        40        50
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: TPR (230)

(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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