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(-) Description

Title :  NMR SOLUTION STRUCTURES OF 3-OXOOCTANYL-ACP FROM STREPTOMYCES COELICOLOR FATTY ACID SYNTHASE
 
Authors :  E. Ploskon, C. J. Arthur, M. P. Crump
Date :  29 Sep 09  (Deposition) - 18 Aug 10  (Release) - 18 Aug 10  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Acyl Carrier Protein, Intermediate Binding, Fatty Acid Synthase, Fatty Acid Biosynthesis, Lipid Synthesis, Phosphopantetheine, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Ploskon, C. J. Arthur, A. L. Kanari, P. Wattana-Amorn, C. Williams, J. Crosby, T. J. Simpson, C. L. Willis, M. P. Crump
Recognition Of Intermediate Functionality By Acyl Carrier Protein Over A Complete Cycle Of Fatty Acid Biosynthesis
Chem. Biol. V. 17 776 2010
PubMed-ID: 20659690  |  Reference-DOI: 10.1016/J.CHEMBIOL.2010.05.024

(-) Compounds

Molecule 1 - ACYL CARRIER PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SC-APOFAS-PET21
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: ACPP, SCO2389, SC4A7.17
    Organism Scientific: STREPTOMYCES COELICOLOR
    Organism Taxid: 1902

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1SYO1Ligand/Ion[(3S)-3-HYDROXY-2,2-DIMETHYL-4-OXO-4-[[3-OXO-3-[2-(3-OXOOCTYLSULFANYL)ETHYLAMINO]PROPYL]AMINO]BUTYL]DIHYDROGEN PHOSPHATE

(-) Sites  (1, 1)

NMR Structure (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:32 , THR A:33 , SER A:40 , LEU A:41 , MET A:43 , VAL A:44 , VAL A:47 , ALA A:50 , VAL A:63 , LYS A:64 , LEU A:66 , ALA A:72BINDING SITE FOR RESIDUE SYO A 101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2KOP)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2KOP)

(-) Exons   (0, 0)

(no "Exon" information available for 2KOP)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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Chain A from PDB  Type:PROTEIN  Length:81
 aligned with P72393_STRCH | P72393 from UniProtKB/TrEMBL  Length:82

    Alignment length:81
                                    11        21        31        41        51        61        71        81 
          P72393_STRCH    2 AATQEEIVAGLAEIVNEIAGIPVEDVKLDKSFTDDLDVDSLSMVEVVVAAEERFDVKIPDDDVKNLKTVGDATKYILDHQA 82
               SCOP domains d2kopa_ A: automated matches                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh...................hhhhhhhhhhhhhhhhh...hhhhhh...hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                  2kop A  1 AATQEEIVAGLAEIVNEIAGIPVEDVKLDKSFTDDLDVDSLSMVEVVVAAEERFDVKIPDDDVKNLKTVGDATKYILDHQA 81
                                    10        20        30        40        50        60        70        80
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2KOP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2KOP)

(-) Gene Ontology  (5, 5)

NMR Structure(hide GO term definitions)
Chain A   (P72393_STRCH | P72393)
molecular function
    GO:0000036    ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process    Interacting selectively and non-covalently with the attachment site of the phosphopantetheine prosthetic group of an acyl carrier protein (ACP) as part of the process of fatty acid biosynthesis.
biological process
    GO:0006633    fatty acid biosynthetic process    The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes.
    GO:0006631    fatty acid metabolic process    The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis.
    GO:0006629    lipid metabolic process    The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        P72393_STRCH | P72393: 2cnr 2koo 2koq 2kor 2kos

(-) Related Entries Specified in the PDB File

2koo ACP WITH OTHER BOUND INTERMEDIATE
2koq ACP WITH OTHER BOUND INTERMEDIATE
2kor ACP WITH OTHER BOUND INTERMEDIATE
2kos ACP WITH OTHER BOUND INTERMEDIATE