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(-) Description

Title :  NMR STRUCTURE OF THE NLRP7 PYRIN DOMAIN
 
Authors :  A. Pinheiro, M. Proell, R. Schwarzenbacher, W. Peti
Date :  21 Jul 09  (Deposition) - 09 Jun 10  (Release) - 15 Sep 10  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Nlrp7, Pyrin Domain, Innate Immune System, Nalp, Atp-Binding, Disease Mutation, Leucine-Rich Repeat, Nucleotide-Binding, Immune System, Signaling Protein, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. S. Pinheiro, M. Proell, C. Eibl, R. Page, R. Schwarzenbacher, W. Pet
Three-Dimensional Structure Of The Nlrp7 Pyrin Domain: Insight Into Pyrin-Pyrin-Mediated Effector Domain Signaling In Innate Immunity.
J. Biol. Chem. V. 285 27402 2010
PubMed-ID: 20547486  |  Reference-DOI: 10.1074/JBC.M110.113191

(-) Compounds

Molecule 1 - NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 7
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPHIS PARALLEL
    Expression System StrainBL21 DE3 STAR
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneNLRP7, NALP7, NOD12, PYPAF3
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymPYRIN-CONTAINING APAF1-LIKE PROTEIN 3, NUCLEOTIDE-BINDING OLIGOMERIZATION DOMAIN PROTEIN 12

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x)A
NMR Structure * (1x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2KM6)

(-) Sites  (0, 0)

(no "Site" information available for 2KM6)

(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1DAPINPS50824 DAPIN domain profile.NALP7_HUMAN1-93  1A:3-95
NMR Structure * (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1DAPINPS50824 DAPIN domain profile.NALP7_HUMAN1-93  1A:3-95

(-) Exons   (0, 0)

(no "Exon" information available for 2KM6)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:96
 aligned with NALP7_HUMAN | Q8WX94 from UniProtKB/Swiss-Prot  Length:980

    Alignment length:96
                                    10        20        30        40        50        60        70        80        90      
           NALP7_HUMAN    1 MTSPQLEWTLQTLLEQLNEDELKSFKSLLWAFPLEDVLQKTPWSEVEEADGKKLAEILVNTSSENWIRNATVNILEEMNLTELCKMAKAEMMEDGQ 96
               SCOP domains ------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains -----PYRIN-2km6A01 A:8-91                                                                ------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhh..hhhhhhhhhhh......hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE DAPIN  PDB: A:3-95 UniProt: 1-93                                                             --- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                  2km6 A  3 MTSPQLEWTLQTLLEQLNEDELKSFKSLLWAFPLEDVLQKTPWSEVEEADGKKLAEILVNTSSENWIRNATVNILEEMNLTELCKMAKAEMMEDGQ 98
                                    12        22        32        42        52        62        72        82        92      

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2KM6)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: Death (18)

(-) Gene Ontology  (2, 2)

NMR Structure(hide GO term definitions)
Chain A   (NALP7_HUMAN | Q8WX94)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

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