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(-) Description

Title :  AIDA-1 SAM DOMAIN TANDEM
 
Authors :  L. W. Donaldson, A. Kurabi
Date :  12 May 09  (Deposition) - 25 Aug 09  (Release) - 06 Oct 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Sam Domain, Tandem, Signaling Protein, Alternative Splicing, Ank Repeat, Cell Junction, Cell Membrane, Cell Projection, Cytoplasm, Membrane, Nucleus, Phosphoprotein, Postsynaptic Cell Membrane, Synapse (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. Kurabi, S. Brener, M. Mobli, J. J. Kwan, L. W. Donaldson
A Nuclear Localization Signal At The Sam-Sam Domain Interface Of Aida-1 Suggests A Requirement For Domain Uncoupling Prior To Nuclear Import.
J. Mol. Biol. V. 392 1168 2009
PubMed-ID: 19666031  |  Reference-DOI: 10.1016/J.JMB.2009.08.004
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN- CONTAINING PROTEIN 1B
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPJEXPRESS401
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentSAM1 AND SAM2 DOMAINS
    GeneAIDA-1B, ANKS1B
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymAMYLOID-BETA PROTEIN INTRACELLULAR DOMAIN- ASSOCIATED PROTEIN 1, AIDA-1, E2A-PBX1-ASSOCIATED PROTEIN, EB-1

 Structural Features

(-) Chains, Units

  
NMR Structure (20x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2KIV)

(-) Sites  (0, 0)

(no "Site" information available for 2KIV)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2KIV)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2KIV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2KIV)

(-) PROSITE Motifs  (1, 2)

NMR Structure (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SAM_DOMAINPS50105 SAM domain profile.ANS1B_HUMAN813-876
884-943
  2A:2-65
A:74-132

(-) Exons   (0, 0)

(no "Exon" information available for 2KIV)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:135
 aligned with ANS1B_HUMAN | Q7Z6G8 from UniProtKB/Swiss-Prot  Length:1248

    Alignment length:135
                                   821       831       841       851       861       871       881       891       901       911       921       931       941     
          ANS1B_HUMAN   812 VQTVGQWLESIGLPQYENHLMANGFDNVQFMGSNVMEDQDLLEIGILNSGHRQRILQAIQLLPKMRPIGHDGYHPTSVAEWLDSIELGDYTKAFLINGYTSMDLLKKIWEVELINVLKINLIGHRKRILASLGDR 946
               SCOP domains d2kiva1 A:1-69 automated matches                                     d2kiva2 A:70-135 automated matches                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------2kivA02 A:76-135 Transcription Factor, Ets-1                 CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhh...hhhhhhhh...hhhhhh....hhhhhhhhh.....hhhhhhhhhhhh..............hhhhhhhh....hhhhhhhhhh..hhhhhh..hhhhhhhhh...hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -SAM_DOMAIN  PDB: A:2-65 UniProt: 813-876                        -------SAM_DOMAIN  PDB: A:74-132 UniProt: 884-943                  --- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2kiv A   1 VQTVGQWLESIGLPQYENHLMANGFDNVQAMGSNVMEDQDLLEIGILNSGHRQRILQAIQLLPKMRPIGHDGAHPTSVAEWLDSIELGDYTKAFLINGYTSMDLLKKIAEVELINVLKINLIGHRKRILASLGDR 135
                                    10        20        30        40        50        60        70        80        90       100       110       120       130     

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

NMR Structure

(-) CATH Domains  (1, 1)

NMR Structure

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2KIV)

(-) Gene Ontology  (12, 12)

NMR Structure(hide GO term definitions)
Chain A   (ANS1B_HUMAN | Q7Z6G8)
molecular function
    GO:0046875    ephrin receptor binding    Interacting selectively and non-covalently with an ephrin receptor.
cellular component
    GO:0015030    Cajal body    A class of nuclear body, first seen after silver staining by Ramon y Cajal in 1903, enriched in small nuclear ribonucleoproteins, and certain general RNA polymerase II transcription factors; ultrastructurally, they appear as a tangle of coiled, electron-dense threads roughly 0.5 micrometers in diameter; involved in aspects of snRNP biogenesis; the protein coilin serves as a marker for Cajal bodies. Some argue that Cajal bodies are the sites for preassembly of transcriptosomes, unitary particles involved in transcription and processing of RNA.
    GO:0030054    cell junction    A cellular component that forms a specialized region of connection between two or more cells or between a cell and the extracellular matrix. At a cell junction, anchoring proteins extend through the plasma membrane to link cytoskeletal proteins in one cell to cytoskeletal proteins in neighboring cells or to proteins in the extracellular matrix.
    GO:0042995    cell projection    A prolongation or process extending from a cell, e.g. a flagellum or axon.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0043197    dendritic spine    A small, membranous protrusion from a dendrite that forms a postsynaptic compartment - typically receiving input from a single presynapse. They function as partially isolated biochemical and an electrical compartments. Spine morphology is variable including "thin", "stubby", "mushroom", and "branched", with a continuum of intermediate morphologies. They typically terminate in a bulb shape, linked to the dendritic shaft by a restriction. Spine remodeling is though to be involved in synaptic plasticity.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0014069    postsynaptic density of dendrite    An electron dense network of proteins within and adjacent to the postsynaptic membrane of the dendrite of asymetric synapses. Its major components include neurotransmitter receptors and the proteins that spatially and functionally organize them such as anchoring and scaffolding molecules, signaling enzymes and cytoskeletal components.
    GO:0045211    postsynaptic membrane    A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters cross the synaptic cleft and transmit the signal to the postsynaptic membrane.
    GO:0045202    synapse    The junction between a nerve fiber of one neuron and another neuron, muscle fiber or glial cell. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ANS1B_HUMAN | Q7Z6G82eam 2ke7 2m38

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