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(-) Description

Title :  SOLUTION NMR STRUCTURE OF F5/8 TYPE C-TERMINAL DOMAIN OF A PUTATIVE CHITOBIASE FROM BACTEROIDES THETAIOTAOMICRON. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET BTR324B
 
Authors :  A. Eletsky, J. L. Mills, H. Lee, D. Lee, M. Jiang, C. Ciccosanti, R. Xiao, R. Nair, J. K. Everett, G. V. T. Swapna, T. B. Acton, B. Rost, G. T. Montelione, J. H. Prestegard, T. Szyperski, Northeast Structural Genomics Consortium (Nesg)
Date :  04 Jan 09  (Deposition) - 03 Feb 09  (Release) - 03 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  F5/8 Type C-Domain, Beta-Sandwich, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Eletsky, J. L. Mills, H. Lee, D. Lee, M. Jiang, C. Ciccosanti, R. Xiao, R. Nair, J. K. Everett, G. V. T. Swapna, T. B. Acton, B. Rost, G. T. Montelione, J. H. Prestegard, T. Szyperski
Solution Nmr Structure Of F5/8 Type C-Terminal Domain Of A Putative Chitobiase From Bacteroides Thetaiotaomicron.
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PUTATIVE CHITOBIASE
    Atcc: 29148
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21-23C
    Expression System Strain: BL21(DE3)+MAGIC
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 291-440
    Gene: BT_0865
    Mutation: YES
    Organism Scientific: BACTEROIDES THETAIOTAOMICRON VPI-5482
    Organism Taxid: 226186
    Strain: DSM 2079 / NCTC 10582 / E50 / VPI-5482

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2KD7)

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (1, 20)

NMR Structure
No.ModelResidues
11, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20Leu A:53 -Pro A:54

 Sequence-Structure Mapping

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:159
 aligned with Q8A9F0_BACTN | Q8A9F0 from UniProtKB/TrEMBL  Length:440

    Alignment length:159
                                                                                                                                                                                440        
                                   299       309       319       329       339       349       359       369       379       389       399       409       419       429       439|        
         Q8A9F0_BACTN   290 EGTKISKSGWEVLSFTTQEASGEGAGNGLAKCLIDGDTETFWHAKWQGGSDPLPYDIVIDMKQNIQIAQVELLPRGRGSNNPIKVVEFAASEDNVNWTPIGRFGFTNQDAALEYYVKSIKARYIRLTIPDDGGNSTVAAIRELDVKGTIIN--------   -
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------F5_F8_type_C-2kd7A01 A:14-143                                                                                                     ---------------- Pfam domains
         Sec.struct. author .....hhhhheeeee...............hhhhh......ee...........eeeeeeeeeeeeeeeeeeee..........eeeeeee.....eeeeeeee.......eeeeeeeeeeeeeeeee..........eeeeeeeeeeee...hhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2kd7 A   1 MGTTISKSGWEVLSFTTQEASGEGAGNGLAKCLIDGDTETFWHAKWQGGSDPLPYDIVIDMKQNIQIAQVELLPRGRGSNNPIKVVEFAASEDNVNWTPIGRFGFTNQDAALEYYVKSIKARYIRLTIPDDGGNSTVAAIRELDVKGTIINLEHHHHHH 159
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2KD7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2KD7)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: GBD (153)

(-) Gene Ontology  (1, 1)

NMR Structure(hide GO term definitions)
Chain A   (Q8A9F0_BACTN | Q8A9F0)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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    Leu A:53 - Pro A:54   [ RasMol ]  
 

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        Q8A9F0_BACTN | Q8A9F0: 3ggl

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