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(-) Description

Title :  NMR STRUCTURE OF FAIM-CTD
 
Authors :  M. Hemond, G. Wagner
Date :  01 Jan 09  (Deposition) - 10 Feb 09  (Release) - 10 Mar 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Protein, Beta Sandwich, Apoptosis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Hemond, T. L. Rothstein, G. Wagner
Fas Apoptosis Inhibitory Molecule Contains A Novel Beta-Sandwich In Contact With A Partially Ordered Domain.
J. Mol. Biol. V. 386 1024 2009
PubMed-ID: 19168072  |  Reference-DOI: 10.1016/J.JMB.2009.01.004
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - FAS APOPTOTIC INHIBITORY MOLECULE 1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector: PGEX
    Fragment: UNP RESIDUES 91-179
    Gene: FAIM, FAIM1
    Mutation: YES
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2KD2)

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2KD2)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:94
 aligned with FAIM1_MOUSE | Q9WUD8 from UniProtKB/Swiss-Prot  Length:179

    Alignment length:123
                                    66        76        86        96       106       116       126       136       146       156       166       176   
          FAIM1_MOUSE    57 GAAKTKATINIDAISGFAYEYTLEIDGKSLKKYMENRSKTTSTWVLRLDGEDLRVVLEKDTMDVWCNGQKMETAGEFVDDGTETHFSVGNHGCYIKAVSSGKRKEGIIHTLIVDNREIPELTQ 179
               SCOP domains --------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------FAIM1-2kd2A01 A:91-177                                                                 -- Pfam domains
         Sec.struct. author .....-----------------------------......eeeeeee....eeeeeee....eeee...............eeeeee....eeeeeeee.......eeeeee....ee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 2kd2 A  86 GPLGS-----------------------------ENRSKTTSTWVLRLDGEDLRVVLEKDTMDVWCNGQKMETAGEFVDDGTETHFSVGNHDCYIKAVSSGKRKEGIIHTLIVDNREIPELTQ 179
                                |    -         -         -    |   96       106       116       126       136       146       156       166       176   
                               90                            91
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: no clan defined [family: FAIM1] (3)

(-) Gene Ontology  (4, 4)

NMR Structure(hide GO term definitions)
Chain A   (FAIM1_MOUSE | Q9WUD8)
biological process
    GO:0006915    apoptotic process    A programmed cell death process which begins when a cell receives an internal (e.g. DNA damage) or external signal (e.g. an extracellular death ligand), and proceeds through a series of biochemical events (signaling pathway phase) which trigger an execution phase. The execution phase is the last step of an apoptotic process, and is typically characterized by rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), plasma membrane blebbing and fragmentation of the cell into apoptotic bodies. When the execution phase is completed, the cell has died.
    GO:0043066    negative regulation of apoptotic process    Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process.
    GO:1902042    negative regulation of extrinsic apoptotic signaling pathway via death domain receptors    Any process that stops, prevents or reduces the frequency, rate or extent of extrinsic apoptotic signaling pathway via death domain receptors.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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