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(-) Description

Title :  NMR SOLUTION STRUCTURE OF TM0212 AT 40 C
 
Authors :  B. Pedrini, T. Herrmann, B. Mohanty, M. Geralt, I. Wilson, K. Wuthrich, Center For Structural Genomics (Jcsg)
Date :  31 Oct 08  (Deposition) - 13 Jan 09  (Release) - 09 Jan 13  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Protein, Lipoyl, Structural Genomics, Psi-2, Protein Structure Initiative, Joint Center For Structural Genomics, Jcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Serrano, B. Pedrini, B. Mohanty, M. Geralt, T. Herrmann, K. Wuthric
The J-Unio Protocol For Automated Protein Structure Determination By Nmr In Solution.
J. Biomol. Nmr V. 53 341 2012
PubMed-ID: 22752932  |  Reference-DOI: 10.1007/S10858-012-9645-2

(-) Compounds

Molecule 1 - GLYCINE CLEAVAGE SYSTEM H PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET 25B
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: GCVH, TM_0212
    Organism Scientific: THERMOTOGA MARITIMA
    Organism Taxid: 2336

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2KA7)

(-) Sites  (0, 0)

(no "Site" information available for 2KA7)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2KA7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2KA7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2KA7)

(-) PROSITE Motifs  (2, 2)

NMR Structure (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1BIOTINYL_LIPOYLPS50968 Biotinyl/lipoyl domain profile.GCSH_THEMA19-101  1A:19-101
2LIPOYLPS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site.GCSH_THEMA44-73  1A:44-73
NMR Structure * (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1BIOTINYL_LIPOYLPS50968 Biotinyl/lipoyl domain profile.GCSH_THEMA19-101  1A:19-101
2LIPOYLPS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site.GCSH_THEMA44-73  1A:44-73

(-) Exons   (0, 0)

(no "Exon" information available for 2KA7)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:124
 aligned with GCSH_THEMA | Q9WY55 from UniProtKB/Swiss-Prot  Length:124

    Alignment length:124
                                    10        20        30        40        50        60        70        80        90       100       110       120    
           GCSH_THEMA     1 MKMKKYTKTHEWVSIEDKVATVGITNHAQEQLGDVVYVDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLFKMEISDEGELEDLLDEQAYQEFCAQE 124
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2ka7A00 A:1-124  [code=2.40.50.100, no name defined]                                                                         CATH domains
               Pfam domains ---GCV_H-2ka7A01 A:4-124                                                                                                     Pfam domains
         Sec.struct. author ..........ee......eeeeeehhhhhhhhh............ee........eee..eee.......eeeeee.hhhhhh.hhhhhh.....eeeeeee.hhhhhhhh.hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------------------BIOTINYL_LIPOYL  PDB: A:19-101 UniProt: 19-101                                     ----------------------- PROSITE (1)
                PROSITE (2) -------------------------------------------LIPOYL  PDB: A:44-73          --------------------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ka7 A   1 MKMKKYTKTHEWVSIEDKVATVGITNHAQEQLGDVVYVDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLFKMEISDEGELEDLLDEQAYQEFCAQE 124
                                    10        20        30        40        50        60        70        80        90       100       110       120
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2KA7)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: Hybrid (58)

(-) Gene Ontology  (2, 2)

NMR Structure(hide GO term definitions)
Chain A   (GCSH_THEMA | Q9WY55)
biological process
    GO:0019464    glycine decarboxylation via glycine cleavage system    The chemical reactions and pathways resulting in the breakdown of glycine by oxidative cleavage to carbon dioxide, ammonia, and a methylene group, mediated by enzymes of the glycine cleavage complex.
cellular component
    GO:0005960    glycine cleavage complex    A protein complex that catalyzes the reversible oxidation of glycine. In E. coli, it has four components: dihydrolipoamide dehydrogenase, glycine dehydrogenase (decarboxylating), lipoyl-GcvH-protein and aminomethyltransferase, also known as L, P, H, and T.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GCSH_THEMA | Q9WY55: 1zko

(-) Related Entries Specified in the PDB File

1zko X-RAY STRUCTURE RELATED ID: 16016 RELATED DB: BMRB RELATED ID: 282092 RELATED DB: TARGETDB