2JZ5 - JenaLib

Title :   NMR SOLUTION STRUCTURE OF PROTEIN VPA0419 FROM VIBRIO PARAHAEMOLYTICUS. NORTHEAST STRUCTURAL GENOMICS TARGET VPR68

Authors :   K. K. Singarapu, D. K. Sukumaran, A. Eletski, D. Parish, L. Zhao, M. Jiang, M. Maglaqui, R. Xiao, J. Liu, M. C. Baran, G. Swapna, T. Acton, B. Rost, G. T. Montelione, T. Szyperski, Northeast Structural Genomics Consortium (Nesg)

Date :   28 Dec 07 (Deposition) - 19 Feb 08 (Release) - 09 Feb 10 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A  (20x)

Keywords :   Gft Nmr, Protein Structure, Nesg, Structural Genomics, Unknown Function, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   K. K. Singarapu, J. L. Mills, R. Xiao, T. Acton, M. Punta, M. Fischer, B. Honig, B. Rost, G. T. Montelione, T. Szyperski
Solution Nmr Structures Of Proteins Vpa0419 From Vibrio Parahaemolyticus And Yiis From Shigella Flexneri Provide Structural Coverage For Protein Domain Family Pfam 04175.
Proteins V. 78 779 2010
PubMed-ID: 19927321 | Reference-DOI: 10.1002/PROT.22630

Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN VPA0419
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET21
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	RESIDUES 17-99
	Gene	:	VPA0419
	Organism Scientific	:	VIBRIO PARAHAEMOLYTICUS RIMD 2210633
	Organism Taxid	:	223926

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:PROTEIN  Length:91
 aligned with Q87J34_VIBPA | Q87J34 from UniProtKB/TrEMBL  Length:99

    Alignment length:91
                                                                                                             99        
                                    26        36        46        56        66        76        86        96  |      - 
          Q87J34_VIBPA   17 AGEIGFIIKEGDEVADVTIFAETKDALESELAKYIELAKSVCAGVEYNVSELTEESKELTARFKFEVSAEKLIFELKTRSLAR--------  -
               SCOP domains ------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2jz5A00 A:1-91  [code=3.30.70.860, no name defined]                                         CATH domains
               Pfam domains DUF406-2jz5A01 A:1-79                                                          ------------ Pfam domains
         Sec.struct. author .............eeeeeee..hhhhhhhhhhhhhhhhhhhh...eee.........eeeeeee..hhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                  2jz5 A  1 AGEIGFIIKEGDEVADVTIFAETKDALESELAKYIELAKSVCAGVEYNVSELTEESKELTARFKFEVSAEKLIFELKTRSLARLEHHHHHH 91
                                    10        20        30        40        50        60        70        80        90

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (1, 1)

Pfam Domains (1, 1)

Gene Ontology (0, 0)

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