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(-) Description

Title :  SOLUTION NMR STRUCTURE OF UNCHARACTERIZED PROTEIN Q5E7H1 FROM VIBRIO FISCHERI. NORTHEAST STRUCTURAL GENOMICS TARGET VFR117
 
Authors :  J. M. Aramini, P. Rossi, D. Wang, C. Nwosu, L. A. Owens, R. Xiao, J. Liu, M. G. V. T. Swapna, T. B. Acton, B. Rost, G. T. Montelione, Northeast Stru Genomics Consortium (Nesg)
Date :  26 Sep 07  (Deposition) - 16 Oct 07  (Release) - 21 Sep 11  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Solution Nmr Structure, Alpha Helical Protein, Structural Genomics, Unknown Function, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. M. Aramini, P. Rossi, M. Fischer, R. Xiao, T. B. Acton, G. T. Montelione
Solution Nmr Structure Of Vf0530 From Vibrio Fischeri Reveals A Nucleic Acid-Binding Function.
Proteins V. 79 2988 2011
PubMed-ID: 21905121  |  Reference-DOI: 10.1002/PROT.23121

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Atcc: 700601
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: VFR117-21.1
    Expression System Strain: BL21(DE3)MGK
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: VF0530
    Organism Scientific: VIBRIO FISCHERI
    Organism Taxid: 312309
    Strain: ES114

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:PROTEIN  Length:82
 aligned with DNABP_VIBF1 | Q5E7H1 from UniProtKB/Swiss-Prot  Length:80

    Alignment length:82
                                                                                                          80  
                                    10        20        30        40        50        60        70        80  
           DNABP_VIBF1    1 MALIMTQQNNPLHGITLQKLLTELVEHYGWEELSYMVNINCFKKDPSIKSSLKFLRKTDWARERVENIYLKLQRHKERNQ--  -
               SCOP domains ---------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------2jvwA01 A:16-75  [code=1.10.720.30, no name defined]        ------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............hhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------- Transcript
                  2jvw A  1 MALIMTQQNNPLHGITLQKLLTELVEHYGWEELSYMVNINCFKKDPSIKSSLKFLRKTDWARERVENIYLKLQRHKERNQLE 82
                                    10        20        30        40        50        60        70        80
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NMR Structure
(-)
Class: Mainly Alpha (13335)

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(-) Gene Ontology  (2, 2)

NMR Structure(hide GO term definitions)
Chain A   (DNABP_VIBF1 | Q5E7H1)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0003690    double-stranded DNA binding    Interacting selectively and non-covalently with double-stranded DNA.

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