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(-) Description

Title :  SOLUTION NMR STRUCTURE OF PROTEIN YEJL FROM E. COLI. NORTHEAST STRUCTURAL GENOMICS TARGET ER309
 
Authors :  J. R. Cort, L. Zhao, M. Jiang, K. Cunningham, L-C. Ma, R. Xiao, J. Liu, M. C G. Swapna, T. B. Acton, B. Rost, G. T. Montelione, M. A. Kennedy, Northe Structural Genomics Consortium (Nesg)
Date :  29 Jun 07  (Deposition) - 07 Aug 07  (Release) - 13 Jul 11  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (20x)
NMR Structure *:  A,B  (1x)
Keywords :  Homodimer, Alpha Helix, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. R. Cort, G. T. Montelione, T. B. Acton, M. A. Kennedy
Nmr Chemical Shift Assignments Of E. Coli Yejl Protein.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UPF0352 PROTEIN YEJL
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21
    Expression System Strain: BL21(DE3)+MAGIC
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: YEJL, B2187, JW2175
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 83333
    Other Details: THE PROTEIN IS A HOMODIMER IN SOLUTION
    Strain: K12

 Structural Features

(-) Chains, Units

  12
NMR Structure (20x): AB
NMR Structure * (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2JRX)

(-) Sites  (0, 0)

(no "Site" information available for 2JRX)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2JRX)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2JRX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2JRX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2JRX)

(-) Exons   (0, 0)

(no "Exon" information available for 2JRX)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:83
 aligned with YEJL_ECOLI | P0AD24 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:83
                                                                                                     75        
                                    10        20        30        40        50        60        70    |    -   
            YEJL_ECOLI    1 MPQISRYSDEQVEQLLAELLNVLEKHKAPTDLSLMVLGNMVTNLINTSIAPAQRQAIANSFARALQSSINEDKAH--------  -
               SCOP domains d2jrxa1 A:1-75 Uncharacterized protein YejL                                -------- SCOP domains
               CATH domains 2jrxA00 A:1-83 YejL-like                                                            CATH domains
               Pfam domains ----------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------- Transcript
                  2jrx A  1 MPQISRYSDEQVEQLLAELLNVLEKHKAPTDLSLMVLGNMVTNLINTSIAPAQRQAIANSFARALQSSINEDKAHLEHHHHHH 83
                                    10        20        30        40        50        60        70        80   


Chain B from PDB  Type:PROTEIN  Length:83
 aligned with YEJL_ECOLI | P0AD24 from UniProtKB/Swiss-Prot  Length:75

    Alignment length:83
                                                                                                     75        
                                    10        20        30        40        50        60        70    |    -   
            YEJL_ECOLI    1 MPQISRYSDEQVEQLLAELLNVLEKHKAPTDLSLMVLGNMVTNLINTSIAPAQRQAIANSFARALQSSINEDKAH--------  -
               SCOP domains d2jrxb_ B: Uncharacterized protein YejL                                             SCOP domains
               CATH domains 2jrxB00 B:1-83 YejL-like                                                            CATH domains
               Pfam domains ----------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------- Transcript
                  2jrx B  1 MPQISRYSDEQVEQLLAELLNVLEKHKAPTDLSLMVLGNMVTNLINTSIAPAQRQAIANSFARALQSSINEDKAHLEHHHHHH 83
                                    10        20        30        40        50        60        70        80
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

NMR Structure
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 2)

NMR Structure
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2JRX)

(-) Gene Ontology  (1, 1)

NMR Structure(hide GO term definitions)
Chain A,B   (YEJL_ECOLI | P0AD24)
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

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  2jrx
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  YEJL_ECOLI | P0AD24
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 Related Entries

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