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(-) Description

Title :  NMR STRUCTURE OF YEAST DUN1 FHA DOMAIN
 
Authors :  C. Yuan, H. Lee, C. Chang, J. Heierhorst, M. Tsai
Date :  02 Jun 07  (Deposition) - 24 Jun 08  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Protein/Phosphopeptide, Cell Cycle (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  H. Lee, C. Yuan, A. Hammet, A. Mahajan, E. S. Chen, M. R. Wu, M. I. Su, J. Heierhorst, M. D. Tsai
Diphosphothreonine-Specific Interaction Between An Sq/Tq Cluster And An Fha Domain In The Rad53-Dun1 Kinase Cascade.
Mol. Cell V. 30 767 2008
PubMed-ID: 18570878  |  Reference-DOI: 10.1016/J.MOLCEL.2008.05.013
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA DAMAGE RESPONSE PROTEIN KINASE DUN1
    ChainsA
    EC Number2.7.11.1
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPQE-60
    Expression System StrainBL21(DE3)
    Expression System Vector TypePLASMID
    GeneDUN1
    Organism CommonYEAST
    Organism ScientificSACCHAROMYCES CEREVISIAE

 Structural Features

(-) Chains, Units

  
NMR Structure (20x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2JQJ)

(-) Sites  (0, 0)

(no "Site" information available for 2JQJ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2JQJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2JQJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2JQJ)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FHA_DOMAINPS50006 Forkhead-associated (FHA) domain profile.DUN1_YEAST56-112  1A:56-112

(-) Exons   (0, 0)

(no "Exon" information available for 2JQJ)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:141
 aligned with DUN1_YEAST | P39009 from UniProtKB/Swiss-Prot  Length:513

    Alignment length:141
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158 
           DUN1_YEAST    19 KRQQRSNKPSSEYTCLGHLVNLIPGKEQKVEITNRNVTTIGRSRSCDVILSEPDISTFHAEFHLLQMDVDNFQRNLINVIDKSRNGTFINGNRLVKKDYILKNGDRIVFGKSCSFLFKYASSSSTDIENDDEKVSSESRSY 159
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------FHA-2jqjA01 A:56-128                                                     ------------------------------- Pfam domains
         Sec.struct. author ..............eeeeeeeee..eeeeeeee....eeee......ee..........eeeeeeeeee..eeeeeeeeee.....eee..ee.....eee...eeeee...eeeeeee...................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------FHA_DOMAIN  PDB: A:56-112 UniProt: 56-112                ----------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2jqj A  19 KRQQRSNKPSSEYTCLGHLVNLIPGKEQKVEITNRNVTTIGRSRSCDVILSEPDISTFHAEFHLLQMDVDNFQRNLINVIDKSRNGTFINGNRLVKKDYILKNGDRIVFGKSCSFLFKYASSSSTDIENDDEKVSSESRSY 159
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158 

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2JQJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2JQJ)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: SMAD-FHA (27)

(-) Gene Ontology  (14, 14)

NMR Structure(hide GO term definitions)
Chain A   (DUN1_YEAST | P39009)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0004672    protein kinase activity    Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
    GO:0004674    protein serine/threonine kinase activity    Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0000077    DNA damage checkpoint    A cell cycle checkpoint that regulates progression through the cell cycle in response to DNA damage. A DNA damage checkpoint may blocks cell cycle progression (in G1, G2 or metaphase) or slow the rate at which S phase proceeds.
    GO:0006974    cellular response to DNA damage stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
    GO:0018105    peptidyl-serine phosphorylation    The phosphorylation of peptidyl-serine to form peptidyl-O-phospho-L-serine.
    GO:0018107    peptidyl-threonine phosphorylation    The phosphorylation of peptidyl-threonine to form peptidyl-O-phospho-L-threonine.
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0006468    protein phosphorylation    The process of introducing a phosphate group on to a protein.
    GO:0048478    replication fork protection    Any process that prevents the collapse of stalled replication forks.
cellular component
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DUN1_YEAST | P390092jql

(-) Related Entries Specified in the PDB File

2jqi 2jql