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(-) Description

Title :  NMR STRUCTURE OF E. COLI YEHR PROTEIN. NORTHEAST STRUCTURAL GENOMICS TARGET ER538.
 
Authors :  K. Ding, T. A. Ramelot, J. R. Cort, C. X. Chen, M. Jiang, K. Cunningham, L. Ma, R. Xiao, J. Liu, M. C. Baran, G. V. T. Swapna, T. B. Acton, B. Rost, G. T. Montelione, M. A. Kennedy, Northeast Structural Genomics Consortium (Nesg)
Date :  08 Mar 07  (Deposition) - 10 Apr 07  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Six Antiparallel Beta Strands, Alpha + Beta Sandwich, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Ding, T. A. Ramelot, J. R. Cort, M. Jiang, R. Xiao, G. V. T. Swapna, G. T. Montelione, M. A. Kennedy
Nmr Structure Of E. Coli Yehr Protein
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL LIPOPROTEIN YEHR
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector: PET21
    Expression System Vector Type: VECTOR
    Gene: YEHR
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

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(-) SS Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:139
 aligned with YEHR_ECOLI | P33354 from UniProtKB/Swiss-Prot  Length:153

    Alignment length:139
                                                                                                                                                            153        
                                    32        42        52        62        72        82        92       102       112       122       132       142       152|        
           YEHR_ECOLI    23 CGDKEESKKFSANLNGTEIAITYVYKGDKVLKQSSETKIQFASIGATTKEDAAKTLEPLSAKYKNIAGVEEKLTYTDTYAQENVTIDMEKVDFKALQGISGINVSAEDAKKGITMAQMELVMKAAGFKEVK--------   -
               SCOP domains -d2joea1 A:2-131 Hypothetical lipoprotein YehR                                                                                     -------- SCOP domains
               CATH domains ----2joeA01 A:5-132 YehR-like superfamily                                                                                           ------- CATH domains
               Pfam domains -----DUF1307-2joeA01 A:6-129                                                                                                     ---------- Pfam domains
         Sec.struct. author .....eeeeeeeee..eeeeeeeeee..eeeeeeeeeeee.......hhhhhhhhhhhhhh........eeeeee...eeeeeeeee....hhhhhh.......hhhhhhhh.hhhhhhhhhhhh...eee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2joe A   1 MGDKEESKKFSANLNGTEIAITYVYKGDKVLKQSSETKIQFASIGATTKEDAAKTLEPLSAKYKNIAGVEEKLTYTDTYAQENVTIDMEKVDFKALQGISGINVSAEDAKKGITMAQMELVMKAAGFKEVKLEHHHHHH 139
                                    10        20        30        40        50        60        70        80        90       100       110       120       130
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: no clan defined [family: DUF1307] (1)

(-) Gene Ontology  (2, 2)

NMR Structure(hide GO term definitions)
Chain A   (YEHR_ECOLI | P33354)
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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