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(-) Description

Title :  SOLUTION STRUCTURE OF AN ANTILIPOPOLYSACCHARIDE FACTOR FROM SHRIMP AND ITS POSSIBLE LIPID A BINDING SITE
 
Authors :  Y. Yang, H. Boze, P. Chemardin, A. Padilla, G. Moulin, A. Tassanakajon, M. Pugniere, F. Roquet, Y. Gueguen, E. Bachere, A. Aumelas
Date :  02 Mar 07  (Deposition) - 11 Mar 08  (Release) - 27 Jan 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (15x)
Keywords :  Alf, Lipid A Binding Protein, Endotoxin, Lipid Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Yang, H. Boze, P. Chemardin, A. Padilla, G. Moulin, A. Tassanakajon, M. Pugniere, F. Roquet, D. Destoumieux-Garzon, Y. Gueguen, E. Bachere, A. Aumelas
Nmr Structure Of Ralf-Pm3, An Anti-Lipopolysaccharide Factor From Shrimp: Model Of The Possible Lipid A-Binding Site
Biopolymers V. 91 207 2009
PubMed-ID: 19107926  |  Reference-DOI: 10.1002/BIP.21119
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ANTILIPOPOLYSACCHARIDE FACTOR
    Chains: A
    Engineered: YES
    Expression System: PICHIA PASTORIS
    Expression System Taxid: 4922
    Organism Common: BLACK TIGER SHRIMP
    Organism Scientific: PENAEUS MONODON
    Organism Taxid: 6687

 Structural Features

(-) Chains, Units

  
NMR Structure (15x): 

Summary Information (see also Sequences/Alignments below)

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(-) Sites  (0, 0)

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(-) SS Bonds  (1, 1)

NMR Structure
No.Residues
1A:34 -A:55

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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Chain A from PDB  Type:PROTEIN  Length:102
 aligned with A5A3I5_PENMO | A5A3I5 from UniProtKB/TrEMBL  Length:123

    Alignment length:102
                                    31        41        51        61        71        81        91       101       111       121  
         A5A3I5_PENMO    22 QCQAQGWEAVAAAVASKIVGLWRNEKTELLGHECKFTVKPYLKRFQVYYKGRMWCPGWTAIRGEASTRSQSGVAGKTAKDFVRKAFQKGLISQQEANQWLSS 123
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ----DUF3254-2jobA01 A:5-101                                                                          - Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhh.....eee..eeeeeeeeeeee..eeeeeeeee.......eeeeee.hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 2job A   1 EAYVQGWEAVAAAVASKIVGLWRNEKTELLGHECKFTVKPYLKRFQVYYKGRMWCPGWTAIRGEASTRSQSGVAGKTAKDFVRKAFQKGLISQQEANQWLSS 102
                                    10        20        30        40        50        60        70        80        90       100
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 Classification and Annotation

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(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: no clan defined [family: DUF3254] (1)

(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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