2JKV - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   STRUCTURE OF HUMAN PHOSPHOGLUCONATE DEHYDROGENASE IN COMPLEX WITH NADPH AT 2.53A

Authors :   E. S. Pilka, K. L. Kavanagh, F. Von Delft, J. R. C. Muniz, J. Murray, S. Pi K. Guo, A. Edwards, C. H. Arrowsmith, J. Weigelt, C. Bountra, U. Opperm

Date :   01 Sep 08 (Deposition) - 01 Sep 09 (Release) - 14 Jan 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.53

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)
Biol. Unit 3: E,F  (1x)

Keywords :   Oxidoreductase, Phosphogluconate, Nadp, Nadph, Pentose Shunt, Dehydrogenase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. S. Ng, F. Von Delft, E. S. Pilka, K. L. Kavanagh, M. A. Mcdonough, P. Savitsky, C. H. Arrowsmith, J. Weigelt, A. Edwards, M. Sundstrom, C. J. Schofield, U. Oppermann
Structure Of Human Phosphogluconate Dehydrogenase In Complex With Nadph At 2. 53A
To Be Published
PubMed: search

Molecule 1 - 6-PHOSPHOGLUCONATE DEHYDROGENASE, DECARBOXYLATING
	Chains	:	A, B, C, D, E, F
	EC Number	:	1.1.1.44
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PNIC28-BSA4
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D
Biological Unit 3 (1x)	:					E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 28)

No.	Name	Count	Type	Full Name
1	CL	11	Ligand/Ion	CHLORIDE ION
2	NAP	5	Ligand/Ion	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
3	SO4	12	Ligand/Ion	SULFATE ION

Biological Unit 1 (2, 6)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	NAP	2	Ligand/Ion	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
3	SO4	4	Ligand/Ion	SULFATE ION

Biological Unit 2 (2, 6)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	NAP	2	Ligand/Ion	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
3	SO4	4	Ligand/Ion	SULFATE ION

Biological Unit 3 (2, 5)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	NAP	1	Ligand/Ion	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
3	SO4	4	Ligand/Ion	SULFATE ION

Asymmetric Unit (28, 28)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLY A:451 , HIS A:453 , SER A:478 , SER A:479 , TYR A:481 , HOH A:2252 , HOH A:2253 , HOH A:2254 , HOH A:2255 , HOH A:2256 , HOH A:2257 , HOH A:2258 , GLY B:10 , LEU B:11 , ALA B:12 , VAL B:13 , MET B:14 , ASN B:33 , ARG B:34 , THR B:35 , LYS B:38 , LEU B:74 , VAL B:75 , LYS B:76 , ALA B:77 , ALA B:80 , PHE B:84 , GLY B:102 , ASN B:103 , VAL B:128 , GLY B:131 , CL B:1484 , HOH B:2046 , HOH B:2049	BINDING SITE FOR RESIDUE NAP A 500
02	AC2	SOFTWARE	ASN A:103 , LYS A:184 , ASN A:188 , NAP B:500	BINDING SITE FOR RESIDUE CL A1484
03	AC3	SOFTWARE	TYR A:192 , GLN A:260 , LYS A:261 , ARG A:288 , HOH A:2160 , HOH A:2259 , HOH A:2260 , HOH A:2261 , ARG B:447 , HIS B:453	BINDING SITE FOR RESIDUE SO4 A1485
04	AC4	SOFTWARE	LYS A:248 , HIS A:249 , HOH A:2262 , HOH A:2263	BINDING SITE FOR RESIDUE SO4 A1486
05	AC5	SOFTWARE	GLY A:10 , LEU A:11 , ALA A:12 , VAL A:13 , MET A:14 , ASN A:33 , ARG A:34 , THR A:35 , LYS A:38 , LEU A:74 , VAL A:75 , LYS A:76 , ALA A:77 , ALA A:80 , PHE A:84 , GLY A:102 , ASN A:103 , VAL A:128 , GLY A:131 , CL A:1484 , HOH A:2014 , HOH A:2039 , GLY B:451 , SER B:478 , SER B:479 , TYR B:481 , HOH B:2262 , HOH B:2263 , HOH B:2264 , HOH B:2265	BINDING SITE FOR RESIDUE NAP B 500
06	AC6	SOFTWARE	NAP A:500 , ASN B:103 , LYS B:184 , ASN B:188	BINDING SITE FOR RESIDUE CL B1484
07	AC7	SOFTWARE	TRP B:150 , LYS B:154	BINDING SITE FOR RESIDUE CL B1485
08	AC8	SOFTWARE	ARG A:447 , TYR B:192 , GLN B:260 , LYS B:261 , ARG B:288 , HOH B:2165 , HOH B:2266 , HOH B:2267	BINDING SITE FOR RESIDUE SO4 B1486
09	AC9	SOFTWARE	LYS B:248 , HIS B:249 , HOH B:2158 , HOH B:2269	BINDING SITE FOR RESIDUE SO4 B1487
10	BC1	SOFTWARE	GLY C:451 , HIS C:453 , SER C:478 , SER C:479 , TYR C:481 , HOH C:2191 , HOH C:2192 , HOH C:2193 , HOH C:2194 , GLY D:10 , LEU D:11 , ALA D:12 , VAL D:13 , MET D:14 , ASN D:33 , ARG D:34 , THR D:35 , LYS D:38 , LEU D:74 , VAL D:75 , LYS D:76 , ALA D:77 , ALA D:80 , PHE D:84 , GLY D:102 , ASN D:103 , VAL D:128 , GLY D:131 , CL D:1486 , HOH D:2053 , HOH D:2054 , HOH D:2133	BINDING SITE FOR RESIDUE NAP C 500
11	BC2	SOFTWARE	TYR C:192 , GLN C:260 , LYS C:261 , ARG C:288 , HOH C:2106 , HOH C:2127 , HOH C:2195 , ARG D:447	BINDING SITE FOR RESIDUE SO4 C1484
12	BC3	SOFTWARE	LYS C:248 , HIS C:249	BINDING SITE FOR RESIDUE SO4 C1485
13	BC4	SOFTWARE	GLY C:10 , LEU C:11 , ALA C:12 , VAL C:13 , MET C:14 , ASN C:33 , ARG C:34 , THR C:35 , LYS C:38 , LEU C:74 , VAL C:75 , LYS C:76 , ALA C:77 , ALA C:80 , PHE C:84 , GLY C:102 , ASN C:103 , VAL C:128 , GLY C:131 , HOH C:2011 , HOH C:2032 , GLY D:451 , HIS D:453 , SER D:478 , SER D:479 , TYR D:481 , HOH D:2184 , HOH D:2188 , HOH D:2189 , HOH D:2190	BINDING SITE FOR RESIDUE NAP D 500
14	BC5	SOFTWARE	ARG C:447 , HIS C:453 , TYR D:192 , LYS D:261 , ARG D:288 , HOH D:2113 , HOH D:2134 , HOH D:2191	BINDING SITE FOR RESIDUE SO4 D1484
15	BC6	SOFTWARE	LYS D:248 , HIS D:249 , HOH D:2130	BINDING SITE FOR RESIDUE SO4 D1485
16	BC7	SOFTWARE	GLY E:451 , HIS E:453 , SER E:478 , SER E:479 , TYR E:481 , HOH E:2226 , HOH E:2232 , HOH E:2233 , HOH E:2234 , HOH E:2235 , GLY F:10 , LEU F:11 , ALA F:12 , VAL F:13 , MET F:14 , ASN F:33 , ARG F:34 , THR F:35 , LYS F:38 , LEU F:74 , VAL F:75 , LYS F:76 , ALA F:77 , ALA F:80 , PHE F:84 , GLY F:102 , ASN F:103 , VAL F:128 , GLY F:131 , CL F:1473 , HOH F:2050 , HOH F:2054 , HOH F:2159	BINDING SITE FOR RESIDUE NAP E 500
17	BC8	SOFTWARE	LYS E:248 , HIS E:249 , HOH E:2237	BINDING SITE FOR RESIDUE SO4 E1484
18	BC9	SOFTWARE	TYR E:192 , LYS E:261 , ARG E:288 , HOH E:2238 , ARG F:447	BINDING SITE FOR RESIDUE SO4 E1485
19	CC1	SOFTWARE	NAP E:500 , ASN F:103 , LYS F:184 , ASN F:188 , HOH F:2247	BINDING SITE FOR RESIDUE CL F1473
20	CC2	SOFTWARE	ARG E:447 , HIS E:453 , TYR F:192 , GLN F:260 , LYS F:261 , ARG F:288 , HOH F:2160 , HOH F:2247 , HOH F:2248	BINDING SITE FOR RESIDUE SO4 F1474
21	CC3	SOFTWARE	LYS F:248 , HIS F:249 , HOH F:2249	BINDING SITE FOR RESIDUE SO4 F1475
22	CC4	SOFTWARE	HOH F:2106 , HOH F:2110 , HOH F:2118	BINDING SITE FOR RESIDUE CL F1476
23	CC5	SOFTWARE	LYS A:303	BINDING SITE FOR RESIDUE CL A1488
24	CC6	SOFTWARE	TRP E:150	BINDING SITE FOR RESIDUE CL E1486
25	CC7	SOFTWARE	TRP A:150 , LYS A:154 , ASP A:172 , HOH A:2096	BINDING SITE FOR RESIDUE CL A1487
26	CC8	SOFTWARE	LYS B:303 , HOH B:2174	BINDING SITE FOR RESIDUE CL B1488
27	CC9	SOFTWARE	LYS F:396	BINDING SITE FOR RESIDUE CL E1488
28	DC1	SOFTWARE	NAP C:500 , SER D:129 , LYS D:184 , ILE D:367 , HOH D:2112	BINDING SITE FOR RESIDUE CL D1486

(no "SS Bond" information available for 2JKV)

Asymmetric Unit

No.	Residues
1	Lys A:67	-	Pro A:68
2	Lys B:67	-	Pro B:68
3	Lys C:67	-	Pro C:68
4	Lys D:67	-	Pro D:68
5	Lys E:67	-	Pro E:68
6	Lys F:67	-	Pro F:68

Asymmetric Unit (1, 6)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_048104	A	268	S	6PGD_HUMAN	Polymorphism	11547610	A/B/C/D/E/F	A	268	S

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (1, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_048104	A	268	S	6PGD_HUMAN	Polymorphism	11547610	A/B	A	268	S

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (1, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_048104	A	268	S	6PGD_HUMAN	Polymorphism	11547610	C/D	A	268	S

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 3 (1, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_048104	A	268	S	6PGD_HUMAN	Polymorphism	11547610	E/F	A	268	S

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (1, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	6PGD	PS00461	6-phosphogluconate dehydrogenase signature.	6PGD_HUMAN	254-266	6	A:254-266 B:254-266 C:254-266 D:254-266 E:254-266 F:254-266

Biological Unit 1 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	6PGD	PS00461	6-phosphogluconate dehydrogenase signature.	6PGD_HUMAN	254-266	2	A:254-266 B:254-266 - - - -

Biological Unit 2 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	6PGD	PS00461	6-phosphogluconate dehydrogenase signature.	6PGD_HUMAN	254-266	2	- - C:254-266 D:254-266 - -

Biological Unit 3 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	6PGD	PS00461	6-phosphogluconate dehydrogenase signature.	6PGD_HUMAN	254-266	2	- - - - E:254-266 F:254-266

(no "Exon" information available for 2JKV)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:482
 aligned with 6PGD_HUMAN | P52209 from UniProtKB/Swiss-Prot  Length:483

    Alignment length:482
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481  
           6PGD_HUMAN     2 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGPSLMPGGNKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLIEITANILKFQDTDGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKLKGPQKFQFDGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPELQNLLLDDFFKSAVENCQDSWRRAVSTGVQAGIPMPCFTTALSFYDGYRHEMLPASLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHGGTVSSSSYNA 483
               SCOP domains d2jkva1 A:2-177 automated matches                                                                                                                                               d2jkva2 A:178-483 automated matches                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains 2jkvA01 A:2-181 NAD(P)-binding Rossmann-like Domain                                                                                                                                 2jkvA02 A:182-436 N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2                                                                                                                                                                                    2jkvA03 A:437-483                               CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee..hhhhhhhhhhhhhh...eeee...hhhhhhhhhh.......ee..hhhhhhhh.....eeee....hhhhhhhhhhhhhhh....eeee....hhhhhhhhhhhhhhh..eeeeeeeehhhhhhhhh.eeeeee...hhhhhhhhhhhhh.ee...ee.....ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh.....hhhhhhhhhhhhh.......hhhh........hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh.........hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh....hhhhhhhhhhhhhh..eee..eeeeee.................. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------6PGD         ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2jkv A   2 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGPSLMPGGNKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLIEITANILKFQDTDGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKLKGPQKFQFDGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPELQNLLLDDFFKSAVENCQDSWRRAVSTGVQAGIPMPCFTTALSFYDGYRHEMLPASLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHGGTVSSSSYNA 483
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481

Chain B from PDB  Type:PROTEIN  Length:482
 aligned with 6PGD_HUMAN | P52209 from UniProtKB/Swiss-Prot  Length:483

    Alignment length:482
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481  
           6PGD_HUMAN     2 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGPSLMPGGNKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLIEITANILKFQDTDGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKLKGPQKFQFDGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPELQNLLLDDFFKSAVENCQDSWRRAVSTGVQAGIPMPCFTTALSFYDGYRHEMLPASLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHGGTVSSSSYNA 483
               SCOP domains d2jkvb1 B:2-177 automated matches                                                                                                                                               d2jkvb2 B:178-483 automated matches                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains 2jkvB01 B:2-181 NAD(P)-binding Rossmann-like Domain                                                                                                                                 2jkvB02 B:182-436 N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2                                                                                                                                                                                    2jkvB03 B:437-483                               CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee..hhhhhhhhhhhhhh...eeee...hhhhhhhhhh.......ee..hhhhhhhh.....eeee....hhhhhhhhhhhhhhh....eeee....hhhhhhhhhhhhhhh..eeeeeeeehhhhhhhhh.eeeeee...hhhhhhhhhhhhh.ee...ee.....ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh.....hhhhhhhhhhhhh.......hhhh........hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh.........hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh....hhhhhhhhhhhhhh..eee..eeeeee.................. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------6PGD         ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2jkv B   2 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGPSLMPGGNKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLIEITANILKFQDTDGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKLKGPQKFQFDGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPELQNLLLDDFFKSAVENCQDSWRRAVSTGVQAGIPMPCFTTALSFYDGYRHEMLPASLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHGGTVSSSSYNA 483
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481

Chain C from PDB  Type:PROTEIN  Length:482
 aligned with 6PGD_HUMAN | P52209 from UniProtKB/Swiss-Prot  Length:483

    Alignment length:482
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481  
           6PGD_HUMAN     2 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGPSLMPGGNKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLIEITANILKFQDTDGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKLKGPQKFQFDGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPELQNLLLDDFFKSAVENCQDSWRRAVSTGVQAGIPMPCFTTALSFYDGYRHEMLPASLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHGGTVSSSSYNA 483
               SCOP domains d2jkvc1 C:2-177 automated matches                                                                                                                                               d2jkvc2 C:178-483 automated matches                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains 2jkvC01 C:2-181 NAD(P)-binding Rossmann-like Domain                                                                                                                                 2jkvC02 C:182-436 N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2                                                                                                                                                                                    2jkvC03 C:437-483                               CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee..hhhhhhhhhhhhhh...eeee...hhhhhhhhhh.......ee..hhhhhhhh.....eeee....hhhhhhhhhhhhhhh....eeee....hhhhhhhhhhhhhhh..eeeeeeeehhhhhhhhh.eeeeee...hhhhhhhhhhhhh.ee...ee.....ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh.....hhhhhhhhhhhhh.......hhhh........hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh.........hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh....hhhhhhhhhhhhhh..eee..eeeeee.................. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------6PGD         ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2jkv C   2 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGPSLMPGGNKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLIEITANILKFQDTDGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKLKGPQKFQFDGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPELQNLLLDDFFKSAVENCQDSWRRAVSTGVQAGIPMPCFTTALSFYDGYRHEMLPASLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHGGTVSSSSYNA 483
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481

Chain D from PDB  Type:PROTEIN  Length:482
 aligned with 6PGD_HUMAN | P52209 from UniProtKB/Swiss-Prot  Length:483

    Alignment length:482
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481  
           6PGD_HUMAN     2 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGPSLMPGGNKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLIEITANILKFQDTDGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKLKGPQKFQFDGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPELQNLLLDDFFKSAVENCQDSWRRAVSTGVQAGIPMPCFTTALSFYDGYRHEMLPASLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHGGTVSSSSYNA 483
               SCOP domains d2jkvd1 D:2-177 automated matches                                                                                                                                               d2jkvd2 D:178-483 automated matches                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains 2jkvD01 D:2-181 NAD(P)-binding Rossmann-like Domain                                                                                                                                 2jkvD02 D:182-436 N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2                                                                                                                                                                                    2jkvD03 D:437-483                               CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee..hhhhhhhhhhhhhh...eeee...hhhhhhhhhh.......ee..hhhhhhhh.....eeee....hhhhhhhhhhhhhhh....eeee....hhhhhhhhhhhhhhh..eeeeeeeehhhhhhhhh.eeeeee...hhhhhhhhhhhhh.ee...ee.....ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh.....hhhhhhhhhhhhh.......hhhh........hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh........hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh..eee..eeeeee.................. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------6PGD         ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2jkv D   2 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGPSLMPGGNKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLIEITANILKFQDTDGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKLKGPQKFQFDGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPELQNLLLDDFFKSAVENCQDSWRRAVSTGVQAGIPMPCFTTALSFYDGYRHEMLPASLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHGGTVSSSSYNA 483
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481

Chain E from PDB  Type:PROTEIN  Length:482
 aligned with 6PGD_HUMAN | P52209 from UniProtKB/Swiss-Prot  Length:483

    Alignment length:482
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481  
           6PGD_HUMAN     2 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGPSLMPGGNKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLIEITANILKFQDTDGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKLKGPQKFQFDGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPELQNLLLDDFFKSAVENCQDSWRRAVSTGVQAGIPMPCFTTALSFYDGYRHEMLPASLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHGGTVSSSSYNA 483
               SCOP domains d2jkve1 E:2-177 automated matches                                                                                                                                               d2jkve2 E:178-483 automated matches                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains 2jkvE01 E:2-181 NAD(P)-binding Rossmann-like Domain                                                                                                                                 2jkvE02 E:182-436 N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2                                                                                                                                                                                    2jkvE03 E:437-483                               CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee..hhhhhhhhhhhhhh...eeee...hhhhhhhhhh.......ee..hhhhhhhh.....eeee....hhhhhhhhhhhhhhh....eeee....hhhhhhhhhhhhhhh..eeeeeeeehhhhhhhhh.eeeeee...hhhhhhhhhhhhh.ee...ee.....ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh.....hhhhhhhhhhhhh.......hhhh........hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh........hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh....hhhhhhhhhhhhhh..eee..eeeeee.................. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------6PGD         ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2jkv E   2 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGPSLMPGGNKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLIEITANILKFQDTDGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKLKGPQKFQFDGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPELQNLLLDDFFKSAVENCQDSWRRAVSTGVQAGIPMPCFTTALSFYDGYRHEMLPASLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHGGTVSSSSYNA 483
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481

Chain F from PDB  Type:PROTEIN  Length:471
 aligned with 6PGD_HUMAN | P52209 from UniProtKB/Swiss-Prot  Length:483

    Alignment length:471
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471 
           6PGD_HUMAN     2 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGPSLMPGGNKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLIEITANILKFQDTDGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKLKGPQKFQFDGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPELQNLLLDDFFKSAVENCQDSWRRAVSTGVQAGIPMPCFTTALSFYDGYRHEMLPASLIQAQRDYFGAHTYELLAKPGQFIHTNWTGH 472
               SCOP domains d2jkvf1 F:2-177 automated matches                                                                                                                                               d2jkvf2 F:178-472 automated matches                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains 2jkvF01 F:2-181 NAD(P)-binding Rossmann-like Domain                                                                                                                                 2jkvF02 F:182-436 N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2                                                                                                                                                                                    ------------------------------------ CATH domains
           Pfam domains (1) -NAD_binding_2-2jkvF07 F:3-176                                                                                                                                                 ---6PGD-2jkvF01 F:180-470                                                                                                                                                                                                                                                                             -- Pfam domains (1)
           Pfam domains (2) -NAD_binding_2-2jkvF08 F:3-176                                                                                                                                                 ---6PGD-2jkvF02 F:180-470                                                                                                                                                                                                                                                                             -- Pfam domains (2)
           Pfam domains (3) -NAD_binding_2-2jkvF09 F:3-176                                                                                                                                                 ---6PGD-2jkvF03 F:180-470                                                                                                                                                                                                                                                                             -- Pfam domains (3)
           Pfam domains (4) -NAD_binding_2-2jkvF10 F:3-176                                                                                                                                                 ---6PGD-2jkvF04 F:180-470                                                                                                                                                                                                                                                                             -- Pfam domains (4)
           Pfam domains (5) -NAD_binding_2-2jkvF11 F:3-176                                                                                                                                                 ---6PGD-2jkvF05 F:180-470                                                                                                                                                                                                                                                                             -- Pfam domains (5)
           Pfam domains (6) -NAD_binding_2-2jkvF12 F:3-176                                                                                                                                                 ---6PGD-2jkvF06 F:180-470                                                                                                                                                                                                                                                                             -- Pfam domains (6)
         Sec.struct. author ....eeee..hhhhhhhhhhhhhh...eeee...hhhhhhhhhh.......ee..hhhhhhhh.....eeee....hhhhhhhhhhhhhhh....eeee....hhhhhhhhhhhhhhh..eeeeeeeehhhhhhhhh.eeeeee...hhhhhhhhhhhhh.ee...ee.....ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh.....hhhhhhhhhhhhh.......hhhh........hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh.........hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh..eee..eeeeee....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------6PGD         -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2jkv F   2 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGPSLMPGGNKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLIEITANILKFQDTDGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKLKGPQKFQFDGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPELQNLLLDDFFKSAVENCQDSWRRAVSTGVQAGIPMPCFTTALSFYDGYRHEMLPASLIQAQRDYFGAHTYELLAKPGQFIHTNWTGH 472
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: 6-phosphogluconate dehydrogenase C-terminal domain-like (119)

Superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like (119)

Family: automated matches (50)

Protein domain: automated matches (50)

Human (Homo sapiens) [TaxId: 9606] (13)

1a	d2jkva2	A:178-483
1b	d2jkve2	E:178-483
1c	d2jkvf2	F:178-472
1d	d2jkvb2	B:178-483
1e	d2jkvc2	C:178-483
1f	d2jkvd2	D:178-483

Class: Alpha and beta proteins (a/b) (23833)

Fold: NAD(P)-binding Rossmann-fold domains (1604)

Superfamily: NAD(P)-binding Rossmann-fold domains (1604)

Family: automated matches (447)

Protein domain: automated matches (447)

Human (Homo sapiens) [TaxId: 9606] (32)

2a	d2jkva1	A:2-177
2b	d2jkvb1	B:2-177
2c	d2jkvc1	C:2-177
2d	d2jkvd1	D:2-177
2e	d2jkve1	E:2-177
2f	d2jkvf1	F:2-177

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: NAD(P)-binding Rossmann-like Domain (1244)

Human (Homo sapiens) (188)

1a	2jkvA01	A:2-181
1b	2jkvF01	F:2-181
1c	2jkvB01	B:2-181
1d	2jkvC01	C:2-181
1e	2jkvD01	D:2-181
1f	2jkvE01	E:2-181

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 (60)

Homologous Superfamily: N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 (59)

Human (Homo sapiens) (12)

2a	2jkvA02	A:182-436
2b	2jkvB02	B:182-436
2c	2jkvC02	C:182-436
2d	2jkvD02	D:182-436
2e	2jkvE02	E:182-436
2f	2jkvF02	F:182-436

Architecture: Up-down Bundle (3216)

Topology: Single alpha-helices involved in coiled-coils or other helix-helix interfaces (552)

Homologous Superfamily: 6-Phosphogluconate Dehydrogenase, domain 3 (20)

Human (Homo sapiens) (1)

3a	2jkvA03	A:437-483
3b	2jkvB03	B:437-483
3c	2jkvC03	C:437-483
3d	2jkvD03	D:437-483
3e	2jkvE03	E:437-483

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: 6PGD_C (47)

Family: 6PGD (10)

Homo sapiens (Human) (1)

1a	6PGD-2jkvF01	F:180-470
1b	6PGD-2jkvF02	F:180-470
1c	6PGD-2jkvF03	F:180-470
1d	6PGD-2jkvF04	F:180-470
1e	6PGD-2jkvF05	F:180-470
1f	6PGD-2jkvF06	F:180-470

Clan: NADP_Rossmann (1239)

Family: NAD_binding_2 (15)

Homo sapiens (Human) (2)

2a	NAD_binding_2-2jkvF07	F:3-176
2b	NAD_binding_2-2jkvF08	F:3-176
2c	NAD_binding_2-2jkvF09	F:3-176
2d	NAD_binding_2-2jkvF10	F:3-176
2e	NAD_binding_2-2jkvF11	F:3-176
2f	NAD_binding_2-2jkvF12	F:3-176

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F (6PGD_HUMAN | P52209)

molecular function
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0004616	phosphogluconate dehydrogenase (decarboxylating) activity	Catalysis of the reaction: 6-phospho-D-gluconate + NADP+ = D-ribulose 5-phosphate + CO2 + NADPH + H+.
biological process
	GO:0019521	D-gluconate metabolic process	The chemical reactions and pathways involving D-gluconate, the anion of D-gluconic acid, the aldonic acid derived from glucose.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0019322	pentose biosynthetic process	The chemical reactions and pathways resulting in the formation of a pentose, any monosaccharide with a chain of five carbon atoms in the molecule.
	GO:0006098	pentose-phosphate shunt	The glucose-6-phosphate catabolic process in which, coupled to NADPH synthesis, glucose-6-P is oxidized with the formation of carbon dioxide (CO2) and ribulose 5-phosphate; ribulose 5-P then enters a series of reactions interconverting sugar phosphates. The pentose phosphate pathway is a major source of reducing equivalents for biosynthesis reactions and is also important for the conversion of hexoses to pentoses.
	GO:0009051	pentose-phosphate shunt, oxidative branch	The branch of the pentose-phosphate shunt which involves the oxidation of glucose 6-P and produces ribulose 5-P, reduced NADP+ and carbon dioxide (CO2).
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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	2jkv
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	6PGD_HUMAN \| P52209
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	1.1.1.44
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		Domain Information	:	XDom
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	6PGD_HUMAN \| P52209	:	4gwg 4gwk

(no "Related Entries Specified in the PDB File" available for 2JKV)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 28)

Sites (28, 28)

SS Bonds (0, 0)

Cis Peptide Bonds (6, 6)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (1, 6)

PROSITE Motifs (1, 6)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (2, 12)

CATH Domains (3, 17)

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