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(-) Description

Title :  STRUCTURAL INSIGHT INTO THE ESCRT-I-II LINK AND ITS ROLE IN MVB TRAFFICKING
 
Authors :  D. J. Gill, H. L. Teo, J. Sun, O. Perisic, D. B. Veprintsev, S. D. Emr, R. L
Date :  16 Nov 06  (Deposition) - 23 Jan 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.30
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Nzf Finger, Hiv Budding, Protein Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. J. Gill, H. Teo, J. Sun, O. Perisic, D. B. Veprintsev, S. D. Emr, R. L. Williams
Structural Insight Into The Escrt-I/-Ii Link And Its Role In Mvb Trafficking.
Embo J. V. 26 600 2007
PubMed-ID: 17215868  |  Reference-DOI: 10.1038/SJ.EMBOJ.7601501

(-) Compounds

Molecule 1 - VPS28-PROV PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: C41 (DE3)
    Expression System Taxid: 562
    Expression System Vector: POPTH
    Fragment: RESIDUES 123-221
    Organism Common: AFRICAN CLAWED FROG
    Organism Scientific: XENOPUS LAEVIS
    Organism Taxid: 8355
    Synonym: VPS28

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2J9W)

(-) Sites  (0, 0)

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 Sequence-Structure Mapping

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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Chain A from PDB  Type:PROTEIN  Length:101
 aligned with Q7T0W4_XENLA | Q7T0W4 from UniProtKB/TrEMBL  Length:221

    Alignment length:101
                                   129       139       149       159       169       179       189       199       209       219 
         Q7T0W4_XENLA   120 DDKGNLNRCIADIVSLFITVMDKLRLEIRAMDEIQPDLRELMETMNRMSHLPPDFEGREKVSQWLQKLSSMSASDELDDSQVRQMLFDLESAYNAFNRFLH 220
               SCOP domains d2j9wa_ A: automated matches                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------- Transcript
                 2j9w A 120 HHMGNLNRCIADIVSLFITVMDKLRLEIRAMDEIQPDLRELMETMNRMSHLPPDFEGREKVSQWLQKLSSMSASDELDDSQVRQMLFDLESAYNAFNRFLH 220
                                   129       139       149       159       169       179       189       199       209       219 


Chain B from PDB  Type:PROTEIN  Length:99
 aligned with Q7T0W4_XENLA | Q7T0W4 from UniProtKB/TrEMBL  Length:221

    Alignment length:99
                                   131       141       151       161       171       181       191       201       211         
         Q7T0W4_XENLA   122 KGNLNRCIADIVSLFITVMDKLRLEIRAMDEIQPDLRELMETMNRMSHLPPDFEGREKVSQWLQKLSSMSASDELDDSQVRQMLFDLESAYNAFNRFLH 220
               SCOP domains d2j9wb_ B: automated matches                                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                 2j9w B 122 MGNLNRCIADIVSLFITVMDKLRLEIRAMDEIQPDLRELMETMNRMSHLPPDFEGREKVSQWLQKLSSMSASDELDDSQVRQMLFDLESAYNAFNRFLH 220
                                   131       141       151       161       171       181       191       201       211
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2J9W)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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(-) Related Entries Specified in the PDB File

2j9u 2 ANGSTROM X-RAY STRUCTURE OF THE YEAST ESCRT-I VPS28 C-TERMINUS IN COMPLEX WITH THE NZF-N DOMAIN FROM ESCRT-II
2j9v 2 ANGSTROM X-RAY STRUCTURE OF THE YEAST ESCRT-I VPS28 C-TERMINUS