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(-) Description

Title :  BIPD OF BURKHOLDERIA PSEUDOMALLEI
 
Authors :  P. Roversi, S. Johnson, T. Field, J. E. Deane, E. E. Galyov, S. M. Lea
Date :  10 Jul 06  (Deposition) - 02 Nov 06  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym./Biol. Unit :  A
Keywords :  Burkholderia Pseudomallei, Toxin, Bipd, Ttss, T3Ss, Type 3 Secretion System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Johnson, P. Roversi, M. Espina, A. Olive, J. E. Deane, S. Birket, T. Field, W. D. Picking, A. J. Blocker, E. E. Galyov, W. L. Picking, S. M. Lea
Self-Chaperoning Of The Type Iii Secretion System Needle Tip Proteins Ipad And Bipd.
J. Biol. Chem. V. 282 4035 2007
PubMed-ID: 17077085  |  Reference-DOI: 10.1074/JBC.M607945200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - MEMBRANE ANTIGEN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEXBIPD
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector: PGEX-4T-1
    Fragment: RESIDUES 10-310
    Organism Scientific: BURKHOLDERIA PSEUDOMALLEI
    Organism Taxid: 28450
    Other Details: PUBLIC HEALTH LABORATORY SERVICE, COLINDALE, LONDON, UK
    Strain: 10276
    Synonym: BIPD

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2IXR)

(-) Sites  (0, 0)

(no "Site" information available for 2IXR)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2IXR)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gln A:125 -Pro A:126
2Thr A:301 -Asp A:302

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2IXR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2IXR)

(-) Exons   (0, 0)

(no "Exon" information available for 2IXR)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:256
 aligned with BIPD_BURPS | Q63K37 from UniProtKB/Swiss-Prot  Length:310

    Alignment length:269
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293         
           BIPD_BURPS    34 AMTDDDLRAAGVDRRVPEQKLGAAIDEFASLRLPDRIDGRFVDGRRANLTVFDDARVAVRGHARAQRNLLERLETELLGGTLDTAGDEGGIQPDPILQGLVDVIGQGKSDIDAYATIVEGLTKYFQSVADVMSKLQDYISAKDDKNMKIDGGKIKALIQQVIDHLPTMQLPKGADIARWRKELGDAVSISDSGVVTINPDKLIKMRDSLPPDGTVWDTARYQAWNTAFSGQKDNIQNDVQTLVEKYSHQNSNFDNLVKVLSGAISTLTD 302
               SCOP domains d2ixra_ A: Putative membrane antigen BipD                                                                                                                                                                                                                                     SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhh...hhhhhhhhhhhhhhhh.....ee....ee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.-------------..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eee....eeeehhhhhhhhhhhhhhh...ee.....hhhhhhhhhh..eee....eeee.hhhhhhhhh......eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ixr A  34 AMTDDDLRAAGVDRRVPEQKLGAAIDEFASLRLPDRIDGRFVDGRRANLTVFDDARVAVRGHARAQRNLLERLETELL-------------QPDPILQGLVDVIGQGKSDIDAYATIVEGLTKYFQSVADVMSKLQDYISAKDDKNMKIDGGKIKALIQQVIDHLPTMQLPKGADIARWRKELGDAVSISDSGVVTINPDKLIKMRDSLPPDGTVWDTARYQAWNTAFSGQKDNIQNDVQTLVEKYSHQNSNFDNLVKVLSGAISTLTD 302
                                    43        53        63        73        83        93       103       | -         - |     133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293         
                                                                                                       111           125
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2IXR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2IXR)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (BIPD_BURPS | Q63K37)
biological process
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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  Cis Peptide Bonds
    Gln A:125 - Pro A:126   [ RasMol ]  
    Thr A:301 - Asp A:302   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BIPD_BURPS | Q63K37: 2izp 2j9t 3nft

(-) Related Entries Specified in the PDB File

2cmq BIPD OF BURKHOLDERIA PSEUDOMALLEI
2izp BIPD - AN INVASION PRTEIN ASSOCIATED WITH THE TYPE-III SECRETION SYSTEM OF BURKHOLDERIA PSEUDOMALLEI.