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(-) Description

Title :  CRYSTAL STRUCTURE OF PROTEIN AF1212 FROM ARCHAEOGLOBUS FULGIDUS, PFAM DRTGG
 
Authors :  R. Tyagi, S. K. Burley, S. Swaminathan, New York Sgx Research Center For Structural Genomics (Nysgxrc)
Date :  10 Oct 06  (Deposition) - 31 Oct 06  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Hypothetical Protein, Nysgxrc, 10007G, Pfam:Drtgg, Structural Genomics, Psi-2, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Tyagi, S. K. Burley, S. Swaminathan
The Crystal Structure Of A Hypothetical Protein (Y1212_arcfu) From Archeoglobus Fulgidus
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN AF_1212
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Strain: DE3
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 200-338
    Gene: AF_1212
    Organism Scientific: ARCHAEOGLOBUS FULGIDUS
    Organism Taxid: 2234

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric Unit (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 3)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2IOJ)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:120
 aligned with Y1212_ARCFU | O29056 from UniProtKB/Swiss-Prot  Length:352

    Alignment length:120
                                   215       225       235       245       255       265       275       285       295       305       315       325
          Y1212_ARCFU   206 GLSVEEIREAVSGEYLIEPREEKMVEQVVIGAMSPQSALRYLREARNAALVTGGDRSDLLLTALEMPNVRCLILTGNLEPVQLVLTKAEERGVPVILTGHDTLTAVSRLESVFGRTRIRG 325
               SCOP domains d2ioja1 A:206-325 Hypothetical protein AF1212                                                                            SCOP domains
               CATH domains 2iojA00 A:206-325  [code=3.40.1390.20, no name defined]                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eehhhhhhhh..eeee......ee.eeee...hhhhhhhhhhh...eeeeee..hhhhhhhhh....eeeeeee.....hhhhhhhhhhhh..eee...hhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 2ioj A 206 GLSVEEIREAVSGEYLIEPREEKmVEQVVIGAmSPQSALRYLREARNAALVTGGDRSDLLLTALEmPNVRCLILTGNLEPVQLVLTKAEERGVPVILTGHDTLTAVSRLESVFGRTRIRG 325
                                   215       225   |   235  |    245       255       265     | 275       285       295       305       315       325
                                                 229-MSE  238-MSE                          271-MSE                                                  


Chain B from PDB  Type:PROTEIN  Length:120
 aligned with Y1212_ARCFU | O29056 from UniProtKB/Swiss-Prot  Length:352

    Alignment length:120
                                   215       225       235       245       255       265       275       285       295       305       315       325
          Y1212_ARCFU   206 GLSVEEIREAVSGEYLIEPREEKMVEQVVIGAMSPQSALRYLREARNAALVTGGDRSDLLLTALEMPNVRCLILTGNLEPVQLVLTKAEERGVPVILTGHDTLTAVSRLESVFGRTRIRG 325
               SCOP domains d2iojb_ B: Hypothetical protein AF1212                                                                                   SCOP domains
               CATH domains 2iojB00 B:206-325  [code=3.40.1390.20, no name defined]                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eehhhhhhhh..eeee......ee.eeee...hhhhhhhhhhh...eeeeee..hhhhhhhhh....eeeeeee.....hhhhhhhhhhhh..eee...hhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 2ioj B 206 GLSVEEIREAVSGEYLIEPREEKmVEQVVIGAmSPQSALRYLREARNAALVTGGDRSDLLLTALEmPNVRCLILTGNLEPVQLVLTKAEERGVPVILTGHDTLTAVSRLESVFGRTRIRG 325
                                   215       225   |   235  |    245       255       265     | 275       285       295       305       315       325
                                                 229-MSE  238-MSE                          271-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2IOJ)

(-) Gene Ontology  (0, 0)

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