2IA9 - JenaLib

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Title :   STRUCTURAL GENOMICS, THE CRYSTAL STRUCTURE OF SPOVG FROM BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168

Authors :   K. Tan, M. Borovilos, J. Abdullah, A. Joachimiak, Midwest Center For Structural Genomics (Mcsg)

Date :   07 Sep 06 (Deposition) - 17 Oct 06 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.00

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)
Biol. Unit 3: E,F  (1x)

Keywords :   Apc85465, Spovg, Bacillus Subtilis Subsp. Subtilis Str. 168, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   K. Tan, M. Borovilos, J. Abdullah, A. Joachimiak
The Crystal Structure Of Spovg From Bacillus Subtilis Subsp. Subtilis Str. 168
To Be Published
PubMed: search
(for further references see the PDB file header)

Molecule 1 - PUTATIVE SEPTATION PROTEIN SPOVG
	Chains	:	A, B, C, D, E, F
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21
	Expression System Plasmid	:	PMCSG19
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Expression System Vector Type	:	PLASMID
	Gene	:	SPOVG, BSU00490
	Organism Scientific	:	BACILLUS SUBTILIS
	Organism Taxid	:	1423
	Strain	:	168
	Synonym	:	STAGE V SPORULATION PROTEIN G

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D
Biological Unit 3 (1x)	:					E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 26)

No.	Name	Count	Type	Full Name
1	MSE	18	Mod. Amino Acid	SELENOMETHIONINE
2	PEG	5	Ligand/Ion	DI(HYDROXYETHYL)ETHER
3	SO4	3	Ligand/Ion	SULFATE ION

Biological Unit 1 (3, 12)

No.	Name	Count	Type	Full Name
1	MSE	6	Mod. Amino Acid	SELENOMETHIONINE
2	PEG	4	Ligand/Ion	DI(HYDROXYETHYL)ETHER
3	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 2 (2, 7)

No.	Name	Count	Type	Full Name
1	MSE	6	Mod. Amino Acid	SELENOMETHIONINE
2	PEG	1	Ligand/Ion	DI(HYDROXYETHYL)ETHER
3	SO4	-1	Ligand/Ion	SULFATE ION

Biological Unit 3 (2, 7)

No.	Name	Count	Type	Full Name
1	MSE	6	Mod. Amino Acid	SELENOMETHIONINE
2	PEG	-1	Ligand/Ion	DI(HYDROXYETHYL)ETHER
3	SO4	1	Ligand/Ion	SULFATE ION

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP D:5 , GLU D:79 , ARG D:82 , HIS E:62 , PRO E:63 , ASN E:65 , SER E:66 , ARG E:69	BINDING SITE FOR RESIDUE SO4 E 101
2	AC2	SOFTWARE	ARG A:7 , ASN B:65 , SER B:67	BINDING SITE FOR RESIDUE SO4 A 102
3	AC3	SOFTWARE	ARG B:58 , HIS B:62 , ILE B:64 , ARG B:69 , HOH B:124	BINDING SITE FOR RESIDUE SO4 B 103
4	AC4	SOFTWARE	ARG D:51 , PRO D:53 , HOH D:219	BINDING SITE FOR RESIDUE PEG D 201
5	AC5	SOFTWARE	ASP A:14 , GLY A:15 , ARG A:16 , ARG A:18 , ASP A:38 , ASN A:40	BINDING SITE FOR RESIDUE PEG A 202

(no "SS Bond" information available for 2IA9)

(no "Cis Peptide Bond" information available for 2IA9)

(no "SAP(SNP)/Variant" information available for 2IA9)

(no "PROSITE Motif" information available for 2IA9)

(no "Exon" information available for 2IA9)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:94
 aligned with SP5G_BACSU | P28015 from UniProtKB/Swiss-Prot  Length:97

    Alignment length:94
                              1                                                                                           
                              |      8        18        28        38        48        58        68        78        88    
            SP5G_BACSU    - --MEVTDVRLRRVNTDGRMRAIASITLDHEFVVHDIRVIDGNNGLFVAMPSKRTPDGEFRDITHPINSSTRGKIQDAVLNEYHRLGDTEALEFE 92
               SCOP domains --d2ia9a1 A:1-92 Putative septation protein SpoVG                                              SCOP domains
               CATH domains 2ia9A00 A:-1-92 SpoVG-like domains                                                             CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeee......eeeeeeeee...eeeeeeeeeee..eeeee..eee.....eee.eee.hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                  2ia9 A -1 NAmEVTDVRLRRVNTDGRmRAIASITLDHEFVVHDIRVIDGNNGLFVAmPSKRTPDGEFRDITHPINSSTRGKIQDAVLNEYHRLGDTEALEFE 92
                              |      8        18        28        38        48        58        68        78        88    
                              |              17-MSE                        47-MSE                                         
                              1-MSE

Chain B from PDB  Type:PROTEIN  Length:95
 aligned with SP5G_BACSU | P28015 from UniProtKB/Swiss-Prot  Length:97

    Alignment length:95
                              1                                                                                            
                              |      8        18        28        38        48        58        68        78        88     
            SP5G_BACSU    - --MEVTDVRLRRVNTDGRMRAIASITLDHEFVVHDIRVIDGNNGLFVAMPSKRTPDGEFRDITHPINSSTRGKIQDAVLNEYHRLGDTEALEFEE 93
               SCOP domains d2ia9b_ B: Putative septation protein SpoVG                                                     SCOP domains
               CATH domains 2ia9B00 B:-1-93 SpoVG-like domains                                                              CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee.......eeeeeeeee...eeeeeeeeee....eeee..eee.....eee.eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                  2ia9 B -1 NAmEVTDVRLRRVNTDGRmRAIASITLDHEFVVHDIRVIDGNNGLFVAmPSKRTPDGEFRDITHPINSSTRGKIQDAVLNEYHRLGDTEALEFEE 93
                              |      8        18        28        38        48        58        68        78        88     
                              1-MSE          17-MSE                        47-MSE

Chain C from PDB  Type:PROTEIN  Length:86
 aligned with SP5G_BACSU | P28015 from UniProtKB/Swiss-Prot  Length:97

    Alignment length:88
                              1                                                                                     
                              |      8        18        28        38        48        58        68        78        
            SP5G_BACSU    - --MEVTDVRLRRVNTDGRMRAIASITLDHEFVVHDIRVIDGNNGLFVAMPSKRTPDGEFRDITHPINSSTRGKIQDAVLNEYHRLGDT 86
               SCOP domains d2ia9c_ C: Putative septation protein SpoVG                                              SCOP domains
               CATH domains 2ia9C00 C:-1-86 SpoVG-like domains                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeee......eeeeeeeee...eeeeeeeeeee..eeeee..ee.--....ee.eee.hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------- Transcript
                  2ia9 C -1 NAmEVTDVRLRRVNTDGRmRAIASITLDHEFVVHDIRVIDGNNGLFVAmPSKR--DGEFRDITHPINSSTRGKIQDAVLNEYHRLGDT 86
                              |      8        18        28        38        48  |  |  58        68        78        
                              1-MSE          17-MSE                        47-MSE 54

Chain D from PDB  Type:PROTEIN  Length:99
 aligned with SP5G_BACSU | P28015 from UniProtKB/Swiss-Prot  Length:97

    Alignment length:99
                              1                                                                                                
                              |      8        18        28        38        48        58        68        78        88         
            SP5G_BACSU    - --MEVTDVRLRRVNTDGRMRAIASITLDHEFVVHDIRVIDGNNGLFVAMPSKRTPDGEFRDITHPINSSTRGKIQDAVLNEYHRLGDTEALEFEEAGAS 97
               SCOP domains d2ia9d_ D: Putative septation protein SpoVG                                                         SCOP domains
               CATH domains 2ia9D00 D:-1-97 SpoVG-like domains                                                                  CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee.......eeeeeeeee...eeeeeeeeeee..eeeee..eee.....eee.eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                  2ia9 D -1 NAmEVTDVRLRRVNTDGRmRAIASITLDHEFVVHDIRVIDGNNGLFVAmPSKRTPDGEFRDITHPINSSTRGKIQDAVLNEYHRLGDTEALEFEEAGAS 97
                              |      8        18        28        38        48        58        68        78        88         
                              1-MSE          17-MSE                        47-MSE

Chain E from PDB  Type:PROTEIN  Length:84
 aligned with SP5G_BACSU | P28015 from UniProtKB/Swiss-Prot  Length:97

    Alignment length:89
                              1                                                                                      
                              |      8        18        28        38        48        58        68        78         
            SP5G_BACSU    - --MEVTDVRLRRVNTDGRMRAIASITLDHEFVVHDIRVIDGNNGLFVAMPSKRTPDGEFRDITHPINSSTRGKIQDAVLNEYHRLGDTE 87
               SCOP domains d2ia9e_ E: Putative septation protein SpoVG                                               SCOP domains
               CATH domains 2ia9E00 E:-1-87 SpoVG-like domains                                                        CATH domains
               Pfam domains ----------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeee......eeeeeeeee...eeeeeeeeeee..eeeee..ee-----..ee.eee.hhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------- Transcript
                  2ia9 E -1 NAmEVTDVRLRRVNTDGRmRAIASITLDHEFVVHDIRVIDGNNGLFVAmPSK-----EFRDITHPINSSTRGKIQDAVLNEYHRLGDTE 87
                              |      8        18        28        38        48 |     |58        68        78         
                              1-MSE          17-MSE                        47-MSE   56

Chain F from PDB  Type:PROTEIN  Length:90
 aligned with SP5G_BACSU | P28015 from UniProtKB/Swiss-Prot  Length:97

    Alignment length:96
                               1                                                                                            
                               |     7        17        27        37        47        57        67        77        87      
            SP5G_BACSU    - ---MEVTDVRLRRVNTDGRMRAIASITLDHEFVVHDIRVIDGNNGLFVAMPSKRTPDGEFRDITHPINSSTRGKIQDAVLNEYHRLGDTEALEFEE 93
               SCOP domains d2ia9f_ F: Putative septation protein SpoVG                                                      SCOP domains
               CATH domains 2ia9F00 F:-2-93 SpoVG-like domains                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeeeeee......eeeeeeeee...eeeeeeeeee....eeee.....------...eee.hhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                  2ia9 F -2 SNAmEVTDVRLRRVNTDGRmRAIASITLDHEFVVHDIRVIDGNNGLFVAmPSKR------RDITHPINSSTRGKIQDAVLNEYHRLGDTEALEFEE 93
                               |     7        17        27        37        47   |     -|       67        77        87      
                               1-MSE          17-MSE                        47-MSE     58

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Folds(

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Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

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Organisms( (-)

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Class: Alpha and beta proteins (a+b) (23004)

Fold: SpoVG-like (3)

Superfamily: SpoVG-like (3)

Family: SpoVG-like (3)

Protein domain: Putative septation protein SpoVG (3)

Bacillus subtilis [TaxId: 1423] (1)

1a	d2ia9a1	A:1-92
1b	d2ia9b_	B:
1c	d2ia9c_	C:
1d	d2ia9d_	D:
1e	d2ia9e_	E:
1f	d2ia9f_	F:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: Arylsulfatase, C-terminal domain (26)

Homologous Superfamily: SpoVG-like domains (3)

Bacillus subtilis. Organism_taxid: 1423. Strain: 168. (1)

1a	2ia9F00	F:-2-93
1b	2ia9C00	C:-1-86
1c	2ia9E00	E:-1-87
1d	2ia9A00	A:-1-92
1e	2ia9B00	B:-1-93
1f	2ia9D00	D:-1-97

(no "Pfam Domain" information available for 2IA9)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F (SP5G_BACSU | P28015)


GO:0030436	asexual sporulation	The formation of spores derived from the products of an asexual cell division. Examples of this process are found in bacteria and fungi.
GO:0007049	cell cycle	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
GO:0051301	cell division	The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
GO:0030435	sporulation resulting in formation of a cellular spore	The process in which a relatively unspecialized cell acquires the specialized features of a cellular spore, a cell form that can be used for dissemination, for survival of adverse conditions because of its heat and dessication resistance, and/or for reproduction.

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