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(-) Description

Title :  T4 POLYNUCLEOTIDE KINASE/PHOSPHATASE WITH BOUND SULFATE AND MAGNESIUM.
 
Authors :  H. Zhu, P. C. Smith, L. K. Wang, C. D. Lima, S. Shuman
Date :  07 Sep 06  (Deposition) - 05 Jun 07  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Biol. Unit 3:  I,J,K,L  (1x)
Keywords :  Polynucleotide Kinase Phosphatase Sulfate-Complex, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Zhu, P. Smith, L. K. Wang, S. Shuman
Structure-Function Analysis Of The 3' Phosphatase Component Of T4 Polynucleotide Kinase/Phosphatase.
Virology V. 366 126 2007
PubMed-ID: 17493655  |  Reference-DOI: 10.1016/J.VIROL.2007.03.059
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - POLYNUCLEOTIDE KINASE
    Chains: A, B, C, D, E, F, G, H, I, J, K, L
    EC Number: 2.7.1.78
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET28-HIS10-SMT3
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: PSET
    Organism Scientific: ENTEROBACTERIA PHAGE T4
    Organism Taxid: 10665
    Synonym: PNK, POLYNUCLEOTIDE 5'-HYDROXY-KINASE

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDEFGHIJKL
Biological Unit 1 (1x): ABCD        
Biological Unit 2 (1x):     EFGH    
Biological Unit 3 (1x):         IJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 54)

Asymmetric Unit (3, 54)
No.NameCountTypeFull Name
1ARS11Ligand/IonARSENIC
2MG7Ligand/IonMAGNESIUM ION
3SO436Ligand/IonSULFATE ION
Biological Unit 1 (2, 16)
No.NameCountTypeFull Name
1ARS4Ligand/IonARSENIC
2MG-1Ligand/IonMAGNESIUM ION
3SO412Ligand/IonSULFATE ION
Biological Unit 2 (2, 16)
No.NameCountTypeFull Name
1ARS4Ligand/IonARSENIC
2MG-1Ligand/IonMAGNESIUM ION
3SO412Ligand/IonSULFATE ION
Biological Unit 3 (2, 15)
No.NameCountTypeFull Name
1ARS3Ligand/IonARSENIC
2MG-1Ligand/IonMAGNESIUM ION
3SO412Ligand/IonSULFATE ION

(-) Sites  (52, 52)

Asymmetric Unit (52, 52)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:165 , ASP A:167 , THR A:169 , ASP A:277 , ASP A:278BINDING SITE FOR RESIDUE MG A 901
02AC2SOFTWAREASP B:165 , ASP B:167 , ASP B:277 , ASP B:278 , ARG B:279BINDING SITE FOR RESIDUE MG B 902
03AC3SOFTWAREASP C:165 , ASP C:167BINDING SITE FOR RESIDUE MG C 903
04AC4SOFTWAREASP D:165 , ASP D:167 , GLY D:168 , THR D:169 , ASP D:278BINDING SITE FOR RESIDUE MG D 904
05AC5SOFTWAREASP E:165 , ASP E:167BINDING SITE FOR RESIDUE MG E 905
06AC6SOFTWAREASP H:165 , ASP H:167 , ASP H:277BINDING SITE FOR RESIDUE MG H 906
07AC7SOFTWAREASP J:167 , GLY J:168 , THR J:169 , ASP J:278BINDING SITE FOR RESIDUE MG J 907
08AC8SOFTWAREGLY A:12 , SER A:13 , GLY A:14 , LYS A:15 , SER A:16 , ARG A:126 , HOH A:2040BINDING SITE FOR RESIDUE SO4 A 911
09AC9SOFTWAREARG A:38 , THR A:86 , MET A:139 , HOH A:2080 , HOH A:2084BINDING SITE FOR RESIDUE SO4 A 912
10BC1SOFTWARELYS A:253 , ASP A:254 , ARG A:279 , GLN A:281BINDING SITE FOR RESIDUE SO4 A 913
11BC2SOFTWAREPRO B:11 , GLY B:12 , SER B:13 , GLY B:14 , LYS B:15 , SER B:16 , ARG B:126BINDING SITE FOR RESIDUE SO4 B 914
12BC3SOFTWAREARG B:34 , ARG B:38 , THR B:86 , HOH B:2094 , HOH B:2677BINDING SITE FOR RESIDUE SO4 B 915
13BC4SOFTWAREARG B:246 , LYS B:253 , ASP B:254 , ARG B:279 , GLN B:281 , HOH B:2962BINDING SITE FOR RESIDUE SO4 B 916
14BC5SOFTWAREGLY C:12 , SER C:13 , GLY C:14 , LYS C:15 , SER C:16 , ARG C:126BINDING SITE FOR RESIDUE SO4 C 917
15BC6SOFTWAREARG C:34 , ARG C:38 , ASP C:85 , THR C:86 , MET C:139 , HOH C:2011 , HOH C:2017BINDING SITE FOR RESIDUE SO4 C 918
16BC7SOFTWARELYS C:253 , ASP C:254 , ARG C:279 , HOH C:2394BINDING SITE FOR RESIDUE SO4 C 919
17BC8SOFTWARECYS D:10 , GLY D:12 , SER D:13 , GLY D:14 , LYS D:15 , SER D:16 , ARG D:126BINDING SITE FOR RESIDUE SO4 D 920
18BC9SOFTWAREARG D:34 , ARG D:38 , ASP D:85 , THR D:86BINDING SITE FOR RESIDUE SO4 D 921
19CC1SOFTWARELYS D:253 , ASP D:254 , ARG D:279 , GLN D:281 , HOH D:2755BINDING SITE FOR RESIDUE SO4 D 922
20CC2SOFTWAREGLY E:12 , SER E:13 , GLY E:14 , LYS E:15 , SER E:16 , ARG E:126BINDING SITE FOR RESIDUE SO4 E 923
21CC3SOFTWAREARG E:34 , ARG E:38 , ASP E:85 , THR E:86 , MET E:139 , HOH E:2280BINDING SITE FOR RESIDUE SO4 E 924
22CC4SOFTWAREARG E:246 , LYS E:253 , ASP E:254 , ARG E:279 , GLN E:281BINDING SITE FOR RESIDUE SO4 E 925
23CC5SOFTWAREGLY F:12 , SER F:13 , GLY F:14 , LYS F:15 , SER F:16 , ARG F:126BINDING SITE FOR RESIDUE SO4 F 926
24CC6SOFTWAREARG F:38 , ASP F:85 , THR F:86 , MET F:139 , HOH F:2230BINDING SITE FOR RESIDUE SO4 F 927
25CC7SOFTWARELYS F:253 , ASP F:254 , ARG F:279 , HOH F:2602BINDING SITE FOR RESIDUE SO4 F 928
26CC8SOFTWAREPRO G:11 , GLY G:12 , SER G:13 , GLY G:14 , LYS G:15 , SER G:16 , ARG G:126 , HOH G:2736BINDING SITE FOR RESIDUE SO4 G 929
27CC9SOFTWAREARG G:34 , ARG G:38 , ASP G:85 , THR G:86 , HOH G:2140BINDING SITE FOR RESIDUE SO4 G 930
28DC1SOFTWAREARG G:246 , LYS G:253 , ASP G:254 , ARG G:279 , HOH G:2794 , HOH G:2812BINDING SITE FOR RESIDUE SO4 G 931
29DC2SOFTWARECYS H:10 , GLY H:12 , SER H:13 , GLY H:14 , LYS H:15 , SER H:16 , ARG H:126BINDING SITE FOR RESIDUE SO4 H 932
30DC3SOFTWAREARG H:34 , ARG H:38 , THR H:86 , HOH H:2348BINDING SITE FOR RESIDUE SO4 H 933
31DC4SOFTWAREARG H:246 , LYS H:253 , ASP H:254 , ARG H:279BINDING SITE FOR RESIDUE SO4 H 934
32DC5SOFTWAREGLY I:12 , SER I:13 , GLY I:14 , LYS I:15 , SER I:16 , ARG I:126BINDING SITE FOR RESIDUE SO4 I 935
33DC6SOFTWAREARG I:34 , ARG I:38 , ASP I:85 , THR I:86 , MET I:139 , HOH I:2479 , HOH I:2520BINDING SITE FOR RESIDUE SO4 I 936
34DC7SOFTWAREARG I:246 , LYS I:253 , ASP I:254 , ARG I:279 , GLN I:281BINDING SITE FOR RESIDUE SO4 I 937
35DC8SOFTWARECYS J:10 , GLY J:12 , SER J:13 , GLY J:14 , LYS J:15 , SER J:16 , ARG J:126BINDING SITE FOR RESIDUE SO4 J 938
36DC9SOFTWAREARG J:38 , ASP J:85 , THR J:86BINDING SITE FOR RESIDUE SO4 J 939
37EC1SOFTWARELYS J:253 , ASP J:254 , ARG J:279 , GLN J:281 , HOH J:2076BINDING SITE FOR RESIDUE SO4 J 940
38EC2SOFTWARECYS K:10 , GLY K:12 , SER K:13 , GLY K:14 , LYS K:15 , SER K:16 , ARG K:126 , HOH K:2342BINDING SITE FOR RESIDUE SO4 K 941
39EC3SOFTWAREARG K:34 , ARG K:38 , ASP K:85 , THR K:86 , HOH K:2099BINDING SITE FOR RESIDUE SO4 K 942
40EC4SOFTWAREARG K:252 , LYS K:253 , ASP K:254 , ARG K:279 , GLN K:281BINDING SITE FOR RESIDUE SO4 K 943
41EC5SOFTWARECYS L:10 , GLY L:12 , SER L:13 , GLY L:14 , LYS L:15 , SER L:16 , ARG L:126BINDING SITE FOR RESIDUE SO4 L 944
42EC6SOFTWAREARG L:34 , ARG L:38 , ASP L:85 , THR L:86 , MET L:139BINDING SITE FOR RESIDUE SO4 L 945
43EC7SOFTWARELYS L:253 , ASP L:254 , ARG L:279BINDING SITE FOR RESIDUE SO4 L 946
44EC8SOFTWARECYS A:184 , TRP A:231BINDING SITE FOR RESIDUE ARS A 951
45EC9SOFTWARETRP B:231BINDING SITE FOR RESIDUE ARS B 952
46FC1SOFTWARECYS C:184 , HOH C:2659BINDING SITE FOR RESIDUE ARS C 953
47FC2SOFTWARECYS D:184 , HOH D:2585BINDING SITE FOR RESIDUE ARS D 954
48FC3SOFTWARECYS E:184 , TRP E:231BINDING SITE FOR RESIDUE ARS E 955
49FC4SOFTWARETYR F:179 , CYS F:184BINDING SITE FOR RESIDUE ARS F 956
50FC5SOFTWARETRP H:231BINDING SITE FOR RESIDUE ARS H 958
51FC6SOFTWARETRP I:231 , HOH I:2897BINDING SITE FOR RESIDUE ARS I 959
52FC7SOFTWARECYS K:184 , TRP K:231BINDING SITE FOR RESIDUE ARS K 961

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2IA5)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2IA5)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2IA5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2IA5)

(-) Exons   (0, 0)

(no "Exon" information available for 2IA5)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:297
 aligned with KIPN_BPT4 | P06855 from UniProtKB/Swiss-Prot  Length:301

    Alignment length:301
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300 
            KIPN_BPT4     1 MKKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYLGLPVYNGTPGKPKAVIFDVDGTLAKMNGRGPYDLEKCDTDVINPMVVELSKMYALMGYQIVVVSGRESGTKEDPTKYYRMTRKWVEDIAGVPLVMQCQREQGDTRKDDVVKEEIFWKHIAPHFDVKLAIDDRTQVVEMWRRIGVECWQVASGDF 301
               SCOP domains d2ia5a2 A:1-152 Polynucleotide kinase, kinase domain                                                                                                    d2ia5a1 A:153-301 Polyn  ucle  otide kinase, phosphatase domain                                                                                       SCOP domains
               CATH domains 2ia5A01 A:1-149 P-loop containing nucleotide triphosphate hydrolases                                                                                 ---------2ia5A02 A:159-301    [c  ode=3.40.50.1000, no name defined]                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.....hhhhhhhhhhhhh..eeeehhhhhhhhhh...hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh.eeee.....hhhhhhhhhhhhhhhh.eeeeee...hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh...........eeeeee..........--....--......hhhhhhhhhhhhh...eeeeeeeee.......hhhhhhhhhhhh......eeeeeee......hhhhhhhhhhhhhh....eeeeeee.hhhhhhhhhhh...eee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ia5 A   1 MKKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYLGLPVYNGTPGKPKAVIFDVDGTLAKMNG--PYDL--CDTDVINPMVVELSKMYALMGYQIVVVSGRESGTKEDPTKYYRMTRKWVEDIAGVPLVMQCQREQGDTRKDDVVKEEIFWKHIAPHFDVKLAIDDRTQVVEMWRRIGVECWQVASGDF 301
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170    |  180|  |   190       200       210       220       230       240       250       260       270       280       290       300 
                                                                                                                                                                                                        175  |  |  |                                                                                                                     
                                                                                                                                                                                                           178  |  |                                                                                                                     
                                                                                                                                                                                                              181  |                                                                                                                     
                                                                                                                                                                                                                 184                                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:300
 aligned with KIPN_BPT4 | P06855 from UniProtKB/Swiss-Prot  Length:301

    Alignment length:301
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300 
            KIPN_BPT4     1 MKKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYLGLPVYNGTPGKPKAVIFDVDGTLAKMNGRGPYDLEKCDTDVINPMVVELSKMYALMGYQIVVVSGRESGTKEDPTKYYRMTRKWVEDIAGVPLVMQCQREQGDTRKDDVVKEEIFWKHIAPHFDVKLAIDDRTQVVEMWRRIGVECWQVASGDF 301
               SCOP domains d2ia5b2 B:1-152 Polynucleotide kinase, kinase domain                                                                                                    d2ia5b1 B:153-301 Polyn ucleotide kinase, phosphatase domain                                                                                          SCOP domains
               CATH domains 2ia5B01 B:1-149 P-loop containing nucleotide triphosphate hydrolases                                                                                 ---------2ia5B02 B:159-301   [code=3.40.50.1000, no name defined]                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.....hhhhhhhhhhhhh..eeeehhhhhhhhhhh..hhhhh..hhhhhhhhhhhhhhhhhhhhh......eeee.....hhhhhhhhhhhhhhhh.eeeeee...hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh...........eeeeee..........-........hhhhhhhhhhhhhhhhhh...eeeeee..........hhhhhhhhhhhhh.....eeeeee.......hhhhhhhhhhhhh.....eeeeeee.hhhhhhhhhhh...eee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ia5 B   1 MKKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYLGLPVYNGTPGKPKAVIFDVDGTLAKMNG-GPYDLEKCDTDVINPMVVELSKMYALMGYQIVVVSGRESGTKEDPTKYYRMTRKWVEDIAGVPLVMQCQREQGDTRKDDVVKEEIFWKHIAPHFDVKLAIDDRTQVVEMWRRIGVECWQVASGDF 301
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170    | |180       190       200       210       220       230       240       250       260       270       280       290       300 
                                                                                                                                                                                                        175 |                                                                                                                            
                                                                                                                                                                                                          177                                                                                                                            


Chain C from PDB  Type:PROTEIN  Length:299
 aligned with KIPN_BPT4 | P06855 from UniProtKB/Swiss-Prot  Length:301

    Alignment length:301
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300 
            KIPN_BPT4     1 MKKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYLGLPVYNGTPGKPKAVIFDVDGTLAKMNGRGPYDLEKCDTDVINPMVVELSKMYALMGYQIVVVSGRESGTKEDPTKYYRMTRKWVEDIAGVPLVMQCQREQGDTRKDDVVKEEIFWKHIAPHFDVKLAIDDRTQVVEMWRRIGVECWQVASGDF 301
               SCOP domains d2ia5c2 C:1-152 Polynucleotide kinase, kinase domain                                                                                                    d2ia5c1 C:153-301 Polyn  ucleotide kinase, phosphatase domain                                                                                         SCOP domains
               CATH domains 2ia5C01 C:1-149 P-loop containing nucleotide triphosphate hydrolases                                                                                 ---------2ia5C02 C:159-301    [code=3.40.50.1000, no name defined]                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.....hhhhhhhhhhhhh..eeeehhhhhhhhhh...hhhhh..hhhhhhhhhhhhhhhhhhhhh......eeee.....hhhhhhhhhhhhhhhh.eeeeee...hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh...........eeeeee..........--............hhhhhhhhhhhhh...eeeeee..........hhhhhhhhhhhh......eeeeee.......hhhhhhhhhhhhhh....eeeeeee.hhhhhhhhhhh...eee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ia5 C   1 MKKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYLGLPVYNGTPGKPKAVIFDVDGTLAKMNG--PYDLEKCDTDVINPMVVELSKMYALMGYQIVVVSGRESGTKEDPTKYYRMTRKWVEDIAGVPLVMQCQREQGDTRKDDVVKEEIFWKHIAPHFDVKLAIDDRTQVVEMWRRIGVECWQVASGDF 301
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170    |  180       190       200       210       220       230       240       250       260       270       280       290       300 
                                                                                                                                                                                                        175  |                                                                                                                           
                                                                                                                                                                                                           178                                                                                                                           


Chain D from PDB  Type:PROTEIN  Length:296
 aligned with KIPN_BPT4 | P06855 from UniProtKB/Swiss-Prot  Length:301

    Alignment length:301
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300 
            KIPN_BPT4     1 MKKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYLGLPVYNGTPGKPKAVIFDVDGTLAKMNGRGPYDLEKCDTDVINPMVVELSKMYALMGYQIVVVSGRESGTKEDPTKYYRMTRKWVEDIAGVPLVMQCQREQGDTRKDDVVKEEIFWKHIAPHFDVKLAIDDRTQVVEMWRRIGVECWQVASGDF 301
               SCOP domains d2ia5d2 D:1-152 Polynucleotide kinase, kinase domain                                                                                                    d2ia5d1 D:153-301 Polynucleotide kinase, phosphatase domain                                                                                           SCOP domains
               CATH domains 2ia5D01 D:1-149 P-loop containing nucleotide triphosphate hydrolases                                                                                 ---------2ia5D02 D:159-301  [code=3.40.50.1000, no name defined]                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.....hhhhhhhhhhhhh..eeeehhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhh......eeee.....hhhhhhhhhhhhhh...eeeeee...hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh...........eeeeee..............hhhhh.....hhhhhhhhhhhhhh..eeeeee....-----...hhhhhhhhhhh.....eeeeee.......hhhhhhhhhhhhhh....eeeeeee.hhhhhhhhhhh...eee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ia5 D   1 MKKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYLGLPVYNGTPGKPKAVIFDVDGTLAKMNGRGPYDLEKCDTDVINPMVVELSKMYALMGYQIVVVSGRES-----PTKYYRMTRKWVEDIAGVPLVMQCQREQGDTRKDDVVKEEIFWKHIAPHFDVKLAIDDRTQVVEMWRRIGVECWQVASGDF 301
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210    |    -|      230       240       250       260       270       280       290       300 
                                                                                                                                                                                                                                                215   221                                                                                


Chain E from PDB  Type:PROTEIN  Length:294
 aligned with KIPN_BPT4 | P06855 from UniProtKB/Swiss-Prot  Length:301

    Alignment length:301
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300 
            KIPN_BPT4     1 MKKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYLGLPVYNGTPGKPKAVIFDVDGTLAKMNGRGPYDLEKCDTDVINPMVVELSKMYALMGYQIVVVSGRESGTKEDPTKYYRMTRKWVEDIAGVPLVMQCQREQGDTRKDDVVKEEIFWKHIAPHFDVKLAIDDRTQVVEMWRRIGVECWQVASGDF 301
               SCOP domains d2ia5e2 E:1-152 Polynucleotide kinase, kinase domain                                                                                                    d2ia5e1 E:153-301 Polyn      ucleotide kinase, phosphatase domain                                                                                     SCOP domains
               CATH domains 2ia5E01 E:1-149 P-loop containing nucleotide triphosphate hydrolases                                                                                 ---------2ia5E02 E:159-301        [code=3.40.50.1000, no name define d]                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.....hhhhhhhhhhhhh..eeeehhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhh......eeee.....hhhhhhhhhhhhhhh..eeeeee...hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh...........eeeeee..........------........hhhhhhhhhhhhh...eeeeeeeee...-.....hhhhhhhhhh......eeeeeee......hhhhhhhhhhhhhh....eeeeeee.hhhhhhhhhhh...eee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ia5 E   1 MKKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYLGLPVYNGTPGKPKAVIFDVDGTLAKMNG------EKCDTDVINPMVVELSKMYALMGYQIVVVSGRESGT-EDPTKYYRMTRKWVEDIAGVPLVMQCQREQGDTRKDDVVKEEIFWKHIAPHFDVKLAIDDRTQVVEMWRRIGVECWQVASGDF 301
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170    |    - |     190       200       210      |220       230       240       250       260       270       280       290       300 
                                                                                                                                                                                                        175    182                                217 |                                                                                  
                                                                                                                                                                                                                                                    219                                                                                  


Chain F from PDB  Type:PROTEIN  Length:298
 aligned with KIPN_BPT4 | P06855 from UniProtKB/Swiss-Prot  Length:301

    Alignment length:301
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300 
            KIPN_BPT4     1 MKKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYLGLPVYNGTPGKPKAVIFDVDGTLAKMNGRGPYDLEKCDTDVINPMVVELSKMYALMGYQIVVVSGRESGTKEDPTKYYRMTRKWVEDIAGVPLVMQCQREQGDTRKDDVVKEEIFWKHIAPHFDVKLAIDDRTQVVEMWRRIGVECWQVASGDF 301
               SCOP domains d2ia5f2 F:1-152 Polynucleotide kinase, kinase domain                                                                                                    d2ia5f1 F:153-301 Poly   nucleotide kinase, phosphatase domain                                                                                        SCOP domains
               CATH domains 2ia5F01 F:1-149 P-loop containing nucleotide triphosphate hydrolases                                                                                 ---------2ia5F02 F:159-30   1  [code=3.40.50.1000, no name defined]                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.....hhhhhhhhhhhhh..eeeehhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhh......eeee.....hhhhhhhhhhhhhh...eeeeee...hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh...........eeeeee.........---............hhhhhhhhhhhhhh..eeeeee..........hhhhhhhhhhhhh.....eeeeee.......hhhhhhhhhhhhhh....eeeeeee.hhhhhhhhhhh...eee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ia5 F   1 MKKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYLGLPVYNGTPGKPKAVIFDVDGTLAKMN---PYDLEKCDTDVINPMVVELSKMYALMGYQIVVVSGRESGTKEDPTKYYRMTRKWVEDIAGVPLVMQCQREQGDTRKDDVVKEEIFWKHIAPHFDVKLAIDDRTQVVEMWRRIGVECWQVASGDF 301
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170   |   180       190       200       210       220       230       240       250       260       270       280       290       300 
                                                                                                                                                                                                       174 178                                                                                                                           


Chain G from PDB  Type:PROTEIN  Length:294
 aligned with KIPN_BPT4 | P06855 from UniProtKB/Swiss-Prot  Length:301

    Alignment length:299
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292         
            KIPN_BPT4     3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYLGLPVYNGTPGKPKAVIFDVDGTLAKMNGRGPYDLEKCDTDVINPMVVELSKMYALMGYQIVVVSGRESGTKEDPTKYYRMTRKWVEDIAGVPLVMQCQREQGDTRKDDVVKEEIFWKHIAPHFDVKLAIDDRTQVVEMWRRIGVECWQVASGDF 301
               SCOP domains d2ia5g2 G:3-152 Polynucleotide kinase, kinase domain                                                                                                  d2ia5g1 G:153-301 Poly   nucl  eotide kinase, phosphatase domain                                                                                      SCOP domains
               CATH domains 2ia5G01 G:3-149 P-loop containing nucleotide triphosphate hydrolases                                                                               ---------2ia5G02 G:159-30   1  [  code=3.40.50.1000, no name defined]                                                                                    CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....hhhhhhhhhhhhh..eeeehhhhhhhhhh...hhhhh..hhhhhhhhhhhhhhhhhhhhh......eeee.....hhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh...........eeeeee.........---....--......hhhhhhhhhhhhhh..eeeeee..........hhhhhhhhhhhhh.....eeeeee.......hhhhhhhhhhhhhh....eeeeeee.hhhhhhhhhhh...eee...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ia5 G   3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYLGLPVYNGTPGKPKAVIFDVDGTLAKMN---PYDL--CDTDVINPMVVELSKMYALMGYQIVVVSGRESGTKEDPTKYYRMTRKWVEDIAGVPLVMQCQREQGDTRKDDVVKEEIFWKHIAPHFDVKLAIDDRTQVVEMWRRIGVECWQVASGDF 301
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172 |   |  |- |     192       202       212       222       232       242       252       262       272       282       292         
                                                                                                                                                                                                     174 178  |  |                                                                                                                     
                                                                                                                                                                                                            181  |                                                                                                                     
                                                                                                                                                                                                               184                                                                                                                     


Chain H from PDB  Type:PROTEIN  Length:301
 aligned with KIPN_BPT4 | P06855 from UniProtKB/Swiss-Prot  Length:301

    Alignment length:301
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300 
            KIPN_BPT4     1 MKKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYLGLPVYNGTPGKPKAVIFDVDGTLAKMNGRGPYDLEKCDTDVINPMVVELSKMYALMGYQIVVVSGRESGTKEDPTKYYRMTRKWVEDIAGVPLVMQCQREQGDTRKDDVVKEEIFWKHIAPHFDVKLAIDDRTQVVEMWRRIGVECWQVASGDF 301
               SCOP domains d2ia5h2 H:1-152 Polynucleotide kinase, kinase domain                                                                                                    d2ia5h1 H:153-301 Polynucleotide kinase, phosphatase domain                                                                                           SCOP domains
               CATH domains 2ia5H01 H:1-149 P-loop containing nucleotide triphosphate hydrolases                                                                                 ---------2ia5H02 H:159-301  [code=3.40.50.1000, no name defined]                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.....hhhhhhhhhhhhh..eeeehhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhh......eeee.....hhhhhhhhhhhhhhhh.eeeeee...hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh...........eeeeee........................hhhhhhhhhhhhhh..eeeeee............hhhhhhhhhh......eeeeee.......hhhhhhhhhhhhhh....eeeeeee.hhhhhhhhhhh...eee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ia5 H   1 MKKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYLGLPVYNGTPGKPKAVIFDVDGTLAKMNGRGPYDLEKCDTDVINPMVVELSKMYALMGYQIVVVSGRESGTKEDPTKYYRMTRKWVEDIAGVPLVMQCQREQGDTRKDDVVKEEIFWKHIAPHFDVKLAIDDRTQVVEMWRRIGVECWQVASGDF 301
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300 


Chain I from PDB  Type:PROTEIN  Length:289
 aligned with KIPN_BPT4 | P06855 from UniProtKB/Swiss-Prot  Length:301

    Alignment length:301
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300 
            KIPN_BPT4     1 MKKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYLGLPVYNGTPGKPKAVIFDVDGTLAKMNGRGPYDLEKCDTDVINPMVVELSKMYALMGYQIVVVSGRESGTKEDPTKYYRMTRKWVEDIAGVPLVMQCQREQGDTRKDDVVKEEIFWKHIAPHFDVKLAIDDRTQVVEMWRRIGVECWQVASGDF 301
               SCOP domains d2ia5i2 I:1-152 Polynucleotide kinase, kinase  domain                                                                                                   d2ia5i1 I:153-301 Poly        nucleotide kinase, phosphatase doma  in                                                                                 SCOP domains
               CATH domains 2ia5I01 I:1-149 P-loop containing nucleotide  triphosp hate hydrolases                                                                               ---------2ia5I02 I:159-30        1  [code=3.40.50.1000, no name defi  ned]                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.....hhhhhhhhhhhhh..eeeehhhhhhhhhhh..-........-hhhhhhhhhhhhhhhhhh......eeee.....hhhhhhhhhhhhhh...eeeeee...hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh...........eeeeee.........--------.......hhhhhhhhhhhhhhh.eeeeee......--....hhhhhhhhhh......eeeeee.......hhhhhhhhhhhhhh....eeeeeee.hhhhhhhhhhh...eee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ia5 I   1 MKKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHE-RDEYKYTK-KEGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYLGLPVYNGTPGKPKAVIFDVDGTLAKMN--------KCDTDVINPMVVELSKMYALMGYQIVVVSGRESGT--DPTKYYRMTRKWVEDIAGVPLVMQCQREQGDTRKDDVVKEEIFWKHIAPHFDVKLAIDDRTQVVEMWRRIGVECWQVASGDF 301
                                    10        20        30        40    | | 50   | |  60        70        80        90       100       110       120       130       140       150       160       170   |     -  |    190       200       210      |220       230       240       250       260       270       280       290       300 
                                                                       45 |     54 |                                                                                                                   174      183                               217  |                                                                                 
                                                                         47       56                                                                                                                                                                 220                                                                                 


Chain J from PDB  Type:PROTEIN  Length:296
 aligned with KIPN_BPT4 | P06855 from UniProtKB/Swiss-Prot  Length:301

    Alignment length:301
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300 
            KIPN_BPT4     1 MKKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYLGLPVYNGTPGKPKAVIFDVDGTLAKMNGRGPYDLEKCDTDVINPMVVELSKMYALMGYQIVVVSGRESGTKEDPTKYYRMTRKWVEDIAGVPLVMQCQREQGDTRKDDVVKEEIFWKHIAPHFDVKLAIDDRTQVVEMWRRIGVECWQVASGDF 301
               SCOP domains d2ia5j2 J:1-152 Polynucleotide kinase, kinase domain                                                                                                    d2ia5j1 J:153-301 Poly   nucl  eotide kinase, phosphatase domain                                                                                      SCOP domains
               CATH domains 2ia5J01 J:1-149 P-loop containing nucleotide triphosphate hydrolases                                                                                 ---------2ia5J02 J:159-30   1  [  code=3.40.50.1000, no name defined]                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.....hhhhhhhhhhhhh..eeeehhhhhhhhhhh..hhhhh..hhhhhhhhhhhhhhhhhhhh.......eeee.....hhhhhhhhhhhhhhh..eeeeee...hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh...........eeeeee.........---....--......hhhhhhhhhhhhhh..eeeeee............hhhhhhhhhh......eeeeee.......hhhhhhhhhhhhhh....eeeeeee.hhhhhhhhhhh...eee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ia5 J   1 MKKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYLGLPVYNGTPGKPKAVIFDVDGTLAKMN---PYDL--CDTDVINPMVVELSKMYALMGYQIVVVSGRESGTKEDPTKYYRMTRKWVEDIAGVPLVMQCQREQGDTRKDDVVKEEIFWKHIAPHFDVKLAIDDRTQVVEMWRRIGVECWQVASGDF 301
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170   |   180|  |   190       200       210       220       230       240       250       260       270       280       290       300 
                                                                                                                                                                                                       174 178  |  |                                                                                                                     
                                                                                                                                                                                                              181  |                                                                                                                     
                                                                                                                                                                                                                 184                                                                                                                     


Chain K from PDB  Type:PROTEIN  Length:288
 aligned with KIPN_BPT4 | P06855 from UniProtKB/Swiss-Prot  Length:301

    Alignment length:301
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300 
            KIPN_BPT4     1 MKKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYLGLPVYNGTPGKPKAVIFDVDGTLAKMNGRGPYDLEKCDTDVINPMVVELSKMYALMGYQIVVVSGRESGTKEDPTKYYRMTRKWVEDIAGVPLVMQCQREQGDTRKDDVVKEEIFWKHIAPHFDVKLAIDDRTQVVEMWRRIGVECWQVASGDF 301
               SCOP domains d2ia5k2 K:1-152 Polynucleotide kinase, kinase domain                                                                                                    d2ia5k1 K:153-301 Poly        nucleotide kinase, phosphatase do     main                                                                              SCOP domains
               CATH domains 2ia5K01 K:1-149 P-loop containing nucleotide triphosphate hydrolases                                                                                 ---------2ia5K02 K:159-30        1  [code=3.40.50.1000, no name de     fined]                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.....hhhhhhhhhhhhh..eeeehhhhhhhhhhh..hhhhh..hhhhhhhhhhhhhhhhhhhh.......eeee.....hhhhhhhhhhhhhhh..eeeeee...hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh...........eeeeee.........--------.......hhhhhhhhhhhhh...eeeeee....-----...hhhhhhhhhhh.....eeeeee.......hhhhhhhhhhhhhh....eeeeeee.hhhhhhhhhhh...eee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ia5 K   1 MKKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYLGLPVYNGTPGKPKAVIFDVDGTLAKMN--------KCDTDVINPMVVELSKMYALMGYQIVVVSGRES-----PTKYYRMTRKWVEDIAGVPLVMQCQREQGDTRKDDVVKEEIFWKHIAPHFDVKLAIDDRTQVVEMWRRIGVECWQVASGDF 301
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170   |     -  |    190       200       210    |    -|      230       240       250       260       270       280       290       300 
                                                                                                                                                                                                       174      183                             215   221                                                                                


Chain L from PDB  Type:PROTEIN  Length:291
 aligned with KIPN_BPT4 | P06855 from UniProtKB/Swiss-Prot  Length:301

    Alignment length:301
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300 
            KIPN_BPT4     1 MKKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYLGLPVYNGTPGKPKAVIFDVDGTLAKMNGRGPYDLEKCDTDVINPMVVELSKMYALMGYQIVVVSGRESGTKEDPTKYYRMTRKWVEDIAGVPLVMQCQREQGDTRKDDVVKEEIFWKHIAPHFDVKLAIDDRTQVVEMWRRIGVECWQVASGDF 301
               SCOP domains d2ia5l2 L:1-152 Polynucleotide kinase, kinase domain                                                                                                    d2ia5l1 L:153-301 Poly  nucl  eotide kinase, phosphatase doma      in                                                                                 SCOP domains
               CATH domains 2ia5L01 L:1-149 P-loop containing nucleotide triphosphate hydrolases                                                                                 ---------2ia5L02 L:159-30  1  [  code=3.40.50.1000, no name defi      ned]                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.....hhhhhhhhhhhhh..eeeehhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhh......eeee.....hhhhhhhhhhhhhhh..eeeeee...hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh...........eeeeee.........--....--.......hhhhhhhhhhhhh...eeeeee..------..hhhhhhhhhhhh......eeeeee.......hhhhhhhhhhhhh.....eeeeeee.hhhhhhhhhhh...eee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ia5 L   1 MKKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYLGLPVYNGTPGKPKAVIFDVDGTLAKMN--GPYD--KCDTDVINPMVVELSKMYALMGYQIVVVSGR------DPTKYYRMTRKWVEDIAGVPLVMQCQREQGDTRKDDVVKEEIFWKHIAPHFDVKLAIDDRTQVVEMWRRIGVECWQVASGDF 301
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170   |  |180  |    190       200       210  |    220       230       240       250       260       270       280       290       300 
                                                                                                                                                                                                       174  |  |  |                           213    220                                                                                 
                                                                                                                                                                                                          177  |  |                                                                                                                      
                                                                                                                                                                                                             180  |                                                                                                                      
                                                                                                                                                                                                                183
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 24)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 24)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Architecture: 3-Layer(aba) Sandwich (12045)
(-)
Topology: Rossmann fold (7312)
(-)
Homologous Superfamily: [code=3.40.50.1000, no name defined] (211)
(-)
Enterobacteria phage t4. Organism_taxid: 10665. (1)
1a2ia5H02H:159-301
1b2ia5B02B:159-301
1c2ia5L02L:159-301
1d2ia5K02K:159-301
1e2ia5C02C:159-301
1f2ia5F02F:159-301
1g2ia5A02A:159-301
1h2ia5D02D:159-301
1i2ia5G02G:159-301
1j2ia5J02J:159-301
1k2ia5E02E:159-301
1l2ia5I02I:159-301
(-)
Homologous Superfamily: P-loop containing nucleotide triphosphate hydrolases (1378)
(-)
Enterobacteria phage t4. Organism_taxid: 10665. (5)
2a2ia5A01A:1-149
2b2ia5J01J:1-149
2c2ia5K01K:1-149
2d2ia5L01L:1-149
2e2ia5G01G:3-149
2f2ia5I01I:1-149
2g2ia5B01B:1-149
2h2ia5C01C:1-149
2i2ia5D01D:1-149
2j2ia5E01E:1-149
2k2ia5F01F:1-149
2l2ia5H01H:1-149

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2IA5)

(-) Gene Ontology  (12, 12)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L   (KIPN_BPT4 | P06855)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0046404    ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity    Catalysis of the reaction: ATP + 5'-dephospho-DNA = ADP + 5'-phospho-DNA.
    GO:0047846    deoxynucleotide 3'-phosphatase activity    Catalysis of the reaction: a deoxynucleoside 3'-phosphate + H2O = a deoxynucleoside + phosphate.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0006281    DNA repair    The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
    GO:0006974    cellular response to DNA damage stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
    GO:0016311    dephosphorylation    The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.

 Visualization

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Asymmetric Unit
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  KIPN_BPT4 | P06855
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  2.7.1.78
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 Related Entries

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        KIPN_BPT4 | P06855: 1ltq 1ly1 1rc8 1rpz 1rrc 5uj0

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