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Title :   CRYSTAL STRUCTURE OF A PUTATIVE CELLOBIOSE-PHOSPHATE CLEAVAGE PROTEIN (EF3048) FROM ENTEROCOCCUS FAECALIS V583 AT 1.70 A RESOLUTION

Authors :   Joint Center For Structural Genomics (Jcsg)

Date :   24 Aug 06 (Deposition) - 05 Sep 06 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.70

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (3x)

Keywords :   Putative Cellobiose-Phosphate Cleavage Protein, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Hypothetical Protein (Ef3048) From Enterococcus Faecalis V583 At 1. 70 A Resolution
To Be Published
PubMed: search

Molecule 1 - UPF0249 PROTEIN EF_3048
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	EF3048
	Organism Scientific	:	ENTEROCOCCUS FAECALIS
	Organism Taxid	:	226185
	Strain	:	V583

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (3x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 14)

No.	Name	Count	Type	Full Name
1	MSE	14	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (1, 42)

No.	Name	Count	Type	Full Name
1	MSE	42	Mod. Amino Acid	SELENOMETHIONINE

(no "Site" information available for 2I5I)

(no "SS Bond" information available for 2I5I)

(no "Cis Peptide Bond" information available for 2I5I)

(no "SAP(SNP)/Variant" information available for 2I5I)

(no "PROSITE Motif" information available for 2I5I)

(no "Exon" information available for 2I5I)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:261
 aligned with YDJC_ENTFA | P59745 from UniProtKB/Swiss-Prot  Length:262

    Alignment length:261
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261 
           YDJC_ENTFA     2 SNKKLIINADDFGYTPAVTQGIIEAHKRGVVTSTTALPTSPYFLEAMESARISAPTLAIGVHLTLTLNQAKPILPREMVPSLVDEAGYFWHQSIFEEKVNLEEVYNEWDAQIISFMKSGRRPDHIDSHHNVHGKNKKLLGVALALARKYQLPLRNASRSIETKDYLELYQDVRTPDEMLYQFYDKAISTETILQLLDMVVCSEGEVFEINCHPAFIDTILQNQSGYCMPRIREVEILTSQEVKEAIEERGILLANYESLAM 262
               SCOP domains d2i5ia1 A:2-262 Uncharacterized protein EF3048                                                                                                                                                                                                                        SCOP domains
               CATH domains 2i5iA00 A:2-261 Glycoside hydrolase/deacetylase                                                                                                                                                                                                                     - CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeee..hhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhhh...eeeeee...............hhhhh.......hhhhhh...hhhhhhhhhhhhhhhhhhhh.....eee.hhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhh.......eee...hhhhhhhhhhhhhhhhhhhh...eeeeee.....hhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh..eeehhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2i5i A   2 SNKKLIINADDFGYTPAVTQGIIEAHKRGVVTSTTALPTSPYFLEAmESARISAPTLAIGVHLTLTLNQAKPILPREmVPSLVDEAGYFWHQSIFEEKVNLEEVYNEWDAQIISFmKSGRRPDHIDSHHNVHGKNKKLLGVALALARKYQLPLRNASRSIETKDYLELYQDVRTPDEmLYQFYDKAISTETILQLLDmVVCSEGEVFEINCHPAFIDTILQNQSGYCmPRIREVEILTSQEVKEAIEERGILLANYESLAm 262
                                    11        21        31        41      | 51        61        71       |81        91       101       111     | 121       131       141       151       161       171       181       191       201       211       221       231       241       251       261|
                                                                         48-MSE                         79-MSE                               117-MSE                                                       179-MSE             199-MSE                       229-MSE                          262-MSE

Chain B from PDB  Type:PROTEIN  Length:261
 aligned with YDJC_ENTFA | P59745 from UniProtKB/Swiss-Prot  Length:262

    Alignment length:261
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261 
           YDJC_ENTFA     2 SNKKLIINADDFGYTPAVTQGIIEAHKRGVVTSTTALPTSPYFLEAMESARISAPTLAIGVHLTLTLNQAKPILPREMVPSLVDEAGYFWHQSIFEEKVNLEEVYNEWDAQIISFMKSGRRPDHIDSHHNVHGKNKKLLGVALALARKYQLPLRNASRSIETKDYLELYQDVRTPDEMLYQFYDKAISTETILQLLDMVVCSEGEVFEINCHPAFIDTILQNQSGYCMPRIREVEILTSQEVKEAIEERGILLANYESLAM 262
               SCOP domains d2i5ib_ B: Uncharacterized protein EF3048                                                                                                                                                                                                                             SCOP domains
               CATH domains 2i5iB00 B:2-261 Glycoside hydrolase/deacetylase                                                                                                                                                                                                                     - CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeee..hhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhhh...eeeeee...............hhhhh..........hhhhh.hhhhhhhhhhhhhhhhhhhh.....eee.hhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhh.......eee...hhhhhhhhhhhhhhhhhhhh...eeeeee.....hhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.eeeehhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2i5i B   2 SNKKLIINADDFGYTPAVTQGIIEAHKRGVVTSTTALPTSPYFLEAmESARISAPTLAIGVHLTLTLNQAKPILPREmVPSLVDEAGYFWHQSIFEEKVNLEEVYNEWDAQIISFmKSGRRPDHIDSHHNVHGKNKKLLGVALALARKYQLPLRNASRSIETKDYLELYQDVRTPDEmLYQFYDKAISTETILQLLDmVVCSEGEVFEINCHPAFIDTILQNQSGYCmPRIREVEILTSQEVKEAIEERGILLANYESLAm 262
                                    11        21        31        41      | 51        61        71       |81        91       101       111     | 121       131       141       151       161       171       181       191       201       211       221       231       241       251       261|
                                                                         48-MSE                         79-MSE                               117-MSE                                                       179-MSE             199-MSE                       229-MSE                          262-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Folds(

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Superfamilies( (-)

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Families(

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Protein Domains( (-)

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Organisms( (-)

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Class: Alpha and beta proteins (a/b) (23833)

Fold: 7-stranded beta/alpha barrel (137)

Superfamily: Glycoside hydrolase/deacetylase (89)

Family: YdjC-like (1)

Protein domain: Uncharacterized protein EF3048 (1)

Enterococcus faecalis [TaxId: 1351] (1)

1a	d2i5ia1	A:2-262
1b	d2i5ib_	B:

Asymmetric Unit

Classes(

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Architectures( (-)

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Topologies( (-)

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Homologous Superfamilies( (-)

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Organisms( (-)

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Class: Alpha Beta (26913)

Architecture: Alpha-Beta Barrel (2994)

Topology: TIM Barrel (2806)

Homologous Superfamily: Glycoside hydrolase/deacetylase (11)

Enterococcus faecalis v583. Organism_taxid: 226185. Strain: v583. (1)

1a	2i5iA00	A:2-261
1b	2i5iB00	B:2-261

(no "Pfam Domain" information available for 2I5I)

Asymmetric Unit(hide GO term definitions)

Chain A,B (YDJC_ENTFA | P59745)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	Catalysis of the hydrolysis of any carbon-nitrogen bond, C-N, with the exception of peptide bonds.
	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	Catalysis of the hydrolysis of any non-peptide carbon-nitrogen bond in a linear amide.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
	GO:0000272	polysaccharide catabolic process	The chemical reactions and pathways resulting in the breakdown of a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically.

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Description

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