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(-) Description

Title :  X-RAY CRYSTAL STRUCTURE OF PROTEIN BH3568 FROM BACILLUS HALODURANS. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM BHR60.
 
Authors :  A. P. Kuzin, Y. Chen, J. Seetharaman, J. Benach, R. Shastry, K. Conover, L. C. Ma, R. Xiao, J. Liu, M. C. Baran, T. B. Acton, B. Rost, G. T. Montelione, J. F. Hunt, L. Tong, Northeast Structural Genomics Consortium (Nesg)
Date :  08 Aug 06  (Deposition) - 22 Aug 06  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  X-Ray, Bhr60, Nesg, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. P. Kuzin, Y. Chen, J. Seetharaman, J. Benach, R. Shastry, K. Conover, L. C. Ma, R. Xiao, J. Liu, M. C. Baran, T. B. Acton, B. Rost, G. T. Montelione, J. F. Hunt, L. Tong
X-Ray Structure Of The Hypothetical Upf0052 Protein Bh3568 From Bacillus Halodurans. Northeast Structural Genomics Consortium Bhr60.
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL UPF0052 PROTEIN BH3568
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21
    Expression System Strain: BL21(DE3)+MAGIC
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BH3568
    Organism Scientific: BACILLUS HALODURANS
    Organism Taxid: 86665

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 20)

Asymmetric Unit (1, 20)
No.NameCountTypeFull Name
1MSE20Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 10)
No.NameCountTypeFull Name
1MSE10Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 10)
No.NameCountTypeFull Name
1MSE10Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 2HZB)

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1A:202 -A:241
2B:202 -B:241
3C:202 -C:241
4D:202 -D:241

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Thr A:161 -Pro A:162
2Gly A:184 -Pro A:185
3Thr B:161 -Pro B:162
4Gly B:184 -Pro B:185
5Thr C:161 -Pro C:162
6Gly C:184 -Pro C:185
7Thr D:161 -Pro D:162
8Gly D:184 -Pro D:185

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2HZB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2HZB)

(-) Exons   (0, 0)

(no "Exon" information available for 2HZB)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:311
 aligned with GNGF_BACHD | Q9K706 from UniProtKB/Swiss-Prot  Length:322

    Alignment length:311
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311 
           GNGF_BACHD     2 KKKNVVVFGGGTGLSVLLRGLKTFPVSITAIVTVADDGGSSGRLRKELDIPPPGDVRNVLVALSEVEPLLEQLFQHRFENGNGLSGHSLGNLLLAGMTSITGDFARGISEMSKVLNVRGKVLPASNRSIILHGEMEDGTIVTGESSIPKAGKKIKRVFLTPKDTKPLREGLEAIRKADVIVIGPGSLYTSVLPNLLVPGICEAIKQSTARKVYICNVMTQNGETDGYTASDHLQAIMDHCGVGIVDDILVHGEPISDTVKAKYAKEKAEPVIVDEHKLKALGVGTISDYFVLEQDDVLRHNASKVSEAILE 312
               SCOP domains d2hzba1 A:2-312 Hypothetical protein BH3568                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.hhhhhhhhhhhhh...eeeeeee.....hhhhhhhhhhh....hhhhhhhhhhhh..hhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee......eeeeee....eee....hhhhh..eeeeeee......hhhhhhhhhhh.eeee........hhhhhh..hhhhhhhhh..eeeee.............hhhhhhhhhhhhhh.....eeeee....hhhhhhhhhh........hhhhhhhh..eeeee...ee....ee.hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2hzb A   2 KKKNVVVFGGGTGLSVLLRGLKTFPVSITAIVTVADDGGSSGRLRKELDIPPPGDVRNVLVALSEVEPLLEQLFQHRFENGNGLSGHSLGNLLLAGmTSITGDFARGISEmSKVLNVRGKVLPASNRSIILHGEmEDGTIVTGESSIPKAGKKIKRVFLTPKDTKPLREGLEAIRKADVIVIGPGSLYTSVLPNLLVPGICEAIKQSTARKVYICNVmTQNGETDGYTASDHLQAImDHCGVGIVDDILVHGEPISDTVKAKYAKEKAEPVIVDEHKLKALGVGTISDYFVLEQDDVLRHNASKVSEAILE 312
                                    11        21        31        41        51        61        71        81        91      |101       111|      121       131    |  141       151       161       171       181       191       201       211       221       231      |241       251       261       271       281       291       301       311 
                                                                                                                           98-MSE       112-MSE                 136-MSE                                                                            219-MSE            238-MSE                                                                      


Chain B from PDB  Type:PROTEIN  Length:311
 aligned with GNGF_BACHD | Q9K706 from UniProtKB/Swiss-Prot  Length:322

    Alignment length:311
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311 
           GNGF_BACHD     2 KKKNVVVFGGGTGLSVLLRGLKTFPVSITAIVTVADDGGSSGRLRKELDIPPPGDVRNVLVALSEVEPLLEQLFQHRFENGNGLSGHSLGNLLLAGMTSITGDFARGISEMSKVLNVRGKVLPASNRSIILHGEMEDGTIVTGESSIPKAGKKIKRVFLTPKDTKPLREGLEAIRKADVIVIGPGSLYTSVLPNLLVPGICEAIKQSTARKVYICNVMTQNGETDGYTASDHLQAIMDHCGVGIVDDILVHGEPISDTVKAKYAKEKAEPVIVDEHKLKALGVGTISDYFVLEQDDVLRHNASKVSEAILE 312
               SCOP domains d2hzbb_ B: Hypothetical protein BH3568                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee.hhhhhhhhhhhh...eeeeeee.....hhhhhhhhhhhh...hhhhhhhhhhhh..hhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee......eeeeee....eee.hhhhhhhh..eeeeeee......hhhhhhhhhhh.eeee........hhhhhh..hhhhhhhhh..eeeee.............hhhhhhhhhhhhhh.....eeeee....hhhhhhhhhh........hhhhhhhh..eeeee...ee....ee.hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2hzb B   2 KKKNVVVFGGGTGLSVLLRGLKTFPVSITAIVTVADDGGSSGRLRKELDIPPPGDVRNVLVALSEVEPLLEQLFQHRFENGNGLSGHSLGNLLLAGmTSITGDFARGISEmSKVLNVRGKVLPASNRSIILHGEmEDGTIVTGESSIPKAGKKIKRVFLTPKDTKPLREGLEAIRKADVIVIGPGSLYTSVLPNLLVPGICEAIKQSTARKVYICNVmTQNGETDGYTASDHLQAImDHCGVGIVDDILVHGEPISDTVKAKYAKEKAEPVIVDEHKLKALGVGTISDYFVLEQDDVLRHNASKVSEAILE 312
                                    11        21        31        41        51        61        71        81        91      |101       111|      121       131    |  141       151       161       171       181       191       201       211       221       231      |241       251       261       271       281       291       301       311 
                                                                                                                           98-MSE       112-MSE                 136-MSE                                                                            219-MSE            238-MSE                                                                      


Chain C from PDB  Type:PROTEIN  Length:311
 aligned with GNGF_BACHD | Q9K706 from UniProtKB/Swiss-Prot  Length:322

    Alignment length:311
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311 
           GNGF_BACHD     2 KKKNVVVFGGGTGLSVLLRGLKTFPVSITAIVTVADDGGSSGRLRKELDIPPPGDVRNVLVALSEVEPLLEQLFQHRFENGNGLSGHSLGNLLLAGMTSITGDFARGISEMSKVLNVRGKVLPASNRSIILHGEMEDGTIVTGESSIPKAGKKIKRVFLTPKDTKPLREGLEAIRKADVIVIGPGSLYTSVLPNLLVPGICEAIKQSTARKVYICNVMTQNGETDGYTASDHLQAIMDHCGVGIVDDILVHGEPISDTVKAKYAKEKAEPVIVDEHKLKALGVGTISDYFVLEQDDVLRHNASKVSEAILE 312
               SCOP domains d2hzbc_ C: Hypothetical protein BH3568                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeehhhhhhhhhhhhh...eeeeeee.....hhhhhhhhhhh....hhhhhhhhhhh...hhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeee......eeeeee....eee.hhhhhhhh..eeeeeee......hhhhhhhhhhh.eeee........hhhhhh..hhhhhhhhh..eeeee.............hhhhhhhhhhhhhh.....eeeee....hhhhhhhhhh........hhhhhhhh..eeeee............hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2hzb C   2 KKKNVVVFGGGTGLSVLLRGLKTFPVSITAIVTVADDGGSSGRLRKELDIPPPGDVRNVLVALSEVEPLLEQLFQHRFENGNGLSGHSLGNLLLAGmTSITGDFARGISEmSKVLNVRGKVLPASNRSIILHGEmEDGTIVTGESSIPKAGKKIKRVFLTPKDTKPLREGLEAIRKADVIVIGPGSLYTSVLPNLLVPGICEAIKQSTARKVYICNVmTQNGETDGYTASDHLQAImDHCGVGIVDDILVHGEPISDTVKAKYAKEKAEPVIVDEHKLKALGVGTISDYFVLEQDDVLRHNASKVSEAILE 312
                                    11        21        31        41        51        61        71        81        91      |101       111|      121       131    |  141       151       161       171       181       191       201       211       221       231      |241       251       261       271       281       291       301       311 
                                                                                                                           98-MSE       112-MSE                 136-MSE                                                                            219-MSE            238-MSE                                                                      


Chain D from PDB  Type:PROTEIN  Length:311
 aligned with GNGF_BACHD | Q9K706 from UniProtKB/Swiss-Prot  Length:322

    Alignment length:311
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311 
           GNGF_BACHD     2 KKKNVVVFGGGTGLSVLLRGLKTFPVSITAIVTVADDGGSSGRLRKELDIPPPGDVRNVLVALSEVEPLLEQLFQHRFENGNGLSGHSLGNLLLAGMTSITGDFARGISEMSKVLNVRGKVLPASNRSIILHGEMEDGTIVTGESSIPKAGKKIKRVFLTPKDTKPLREGLEAIRKADVIVIGPGSLYTSVLPNLLVPGICEAIKQSTARKVYICNVMTQNGETDGYTASDHLQAIMDHCGVGIVDDILVHGEPISDTVKAKYAKEKAEPVIVDEHKLKALGVGTISDYFVLEQDDVLRHNASKVSEAILE 312
               SCOP domains d2hzbd_ D: Hypothetical protein BH3568                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.hhhhhhhhhhhhh...eeeeeee.....hhhhhhhhhhhh...hhhhhhhhhhhh..hhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeee......eeeeee....eee.hhhhhhhh..eeeeeee......hhhhhhhhhhh.eeee........hhhhhh..hhhhhhhhh..eeeee.............hhhhhhhhhhhhhh.....eeeee....hhhhhhhhhh........hhhhhhh...eeeee...ee....ee.hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2hzb D   2 KKKNVVVFGGGTGLSVLLRGLKTFPVSITAIVTVADDGGSSGRLRKELDIPPPGDVRNVLVALSEVEPLLEQLFQHRFENGNGLSGHSLGNLLLAGmTSITGDFARGISEmSKVLNVRGKVLPASNRSIILHGEmEDGTIVTGESSIPKAGKKIKRVFLTPKDTKPLREGLEAIRKADVIVIGPGSLYTSVLPNLLVPGICEAIKQSTARKVYICNVmTQNGETDGYTASDHLQAImDHCGVGIVDDILVHGEPISDTVKAKYAKEKAEPVIVDEHKLKALGVGTISDYFVLEQDDVLRHNASKVSEAILE 312
                                    11        21        31        41        51        61        71        81        91      |101       111|      121       131    |  141       151       161       171       181       191       201       211       221       231      |241       251       261       271       281       291       301       311 
                                                                                                                           98-MSE       112-MSE                 136-MSE                                                                            219-MSE            238-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2HZB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2HZB)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (GNGF_BACHD | Q9K706)
biological process
    GO:0008360    regulation of cell shape    Any process that modulates the surface configuration of a cell.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  2hzb
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GNGF_BACHD | Q9K706: 2o2z

(-) Related Entries Specified in the PDB File

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