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Title :   CRYSTAL STRUCTURE OF AEDES AEGYPTI ALANINE GLYOXYLATE AMINOTRANSFERASE IN COMPLEX WITH ALANINE

Authors :   Q. Han, H. Robinson, Y. G. Gao, N. Vogelaar, S. R. Wilson, M. Rizzi, J. Li

Date :   27 Jul 06 (Deposition) - 26 Sep 06 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym./Biol. Unit : A,B

Keywords :   Alpha And Beta Protein, Plp-Dependent Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Q. Han, H. Robinson, Y. G. Gao, N. Vogelaar, S. R. Wilson, M. Rizzi, J. Li
Crystal Structures Of Aedes Aegypti Alanine Glyoxylate Aminotransferase.
J. Biol. Chem. V. 281 37175 2006
PubMed-ID: 16990263 | Reference-DOI: 10.1074/JBC.M607032200
(for further references see the PDB file header)

Molecule 1 - ALANINE GLYOXYLATE AMINOTRANSFERASE
	Chains	:	A, B
	EC Number	:	2.6.1.44
	Engineered	:	YES
	Expression System	:	SPODOPTERA FRUGIPERDA
	Expression System Common	:	FALL ARMYWORM
	Expression System Plasmid	:	PBLUEBAC4.5
	Expression System Strain	:	SF9
	Expression System Taxid	:	7108
	Expression System Vector Type	:	BACULOVIRUS
	Organism Common	:	YELLOW FEVER MOSQUITO
	Organism Scientific	:	AEDES AEGYPTI
	Organism Taxid	:	7159
	Strain	:	LIVERPOOL

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (3, 4)

No.	Name	Count	Type	Full Name
1	1BO	1	Ligand/Ion	1-BUTANOL
2	ALA	1	Mod. Amino Acid	ALANINE
3	LLP	2	Mod. Amino Acid	2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	PRO A:25 , SER A:155 , LLP A:206 , LEU A:347 , ARG A:356 , HIS B:45 , TYR B:257	BINDING SITE FOR RESIDUE ALA A 701
2	AC2	SOFTWARE	HIS A:45 , TYR A:257 , PRO B:25 , SER B:155 , ARG B:356 , HOH B:1082 , HOH B:1111	BINDING SITE FOR RESIDUE 1BO B 801

(no "SS Bond" information available for 2HUU)

Asymmetric/Biological Unit

No.	Residues
1	Gly A:26	-	Pro A:27
2	Gly B:26	-	Pro B:27

(no "SAP(SNP)/Variant" information available for 2HUU)

(no "PROSITE Motif" information available for 2HUU)

(no "Exon" information available for 2HUU)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:386
 aligned with Q3LSM4_AEDAE | Q3LSM4 from UniProtKB/TrEMBL  Length:393

    Alignment length:387
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       
         Q3LSM4_AEDAE     1 MEYKVTPPAVLREPLVTPNKLLMGPGPSNAPQRVLDAMSRPILGHLHPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNLLEDGDVILIGHTGHWGDRSADMATRYGADVRVVKSKVGQSLSLDEIRDALLIHKPSVLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVASLGGAPMFMDRWEIDAMYTGSQKVLGAPPGITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDAGFELYADPKDRLSTVTTIKVPQGVDWLKAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQNATTERVDRVLQVFQEAVAAVKPDV 387
               SCOP domains d2huua_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains 2huuA01 A:1-30,A:280-385      2huuA02 A:31-279 Type I PLP-dependent aspartate aminotransferase-like (Major domain)                                                                                                                                                                     2huuA01 A:1-30,A:280-385 Aspartate Aminotransferase, domain 1                                             -- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhh.......ee........hhhhhhhh........hhhhhhhhhhhhhhhhhhhh....eeeee..hhhhhhhhhhhhhh....eeeeee.hhhhhhhhhhhhhh..eeeeee.......hhhhhhhhhhhhh..eeeee.ee....ee....hhhhhhhhh..eeeee..................eee.............eeeeehhhhhhhhhh......hhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhh...eeeee.....hhhhhhhhhhhhhhee....hhhhh..eeeee.hhhhhhhhhhhhhhhhhhhhhhhhh.-. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2huu A   1 MEYKVTPPAVLREPLVTPNKLLMGPGPSNAPQRVLDAMSRPILGHLHPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNLLEDGDVILIGHTGHWGDRSADMATRYGADVRVVKSKVGQSLSLDEIRDALLIHKPSVLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVASLGGAPMFMDRWEIDAMYTGSQkVLGAPPGITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDAGFELYADPKDRLSTVTTIKVPQGVDWLKAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQNATTERVDRVLQVFQEAVAAVKP-A 701
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200     | 210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380    | |
                                                                                                                                                                                                                                       206-LLP                                                                                                                                                                            385 |
                                                                                                                                                                                                                                                                                                                                                                                                                            701

Chain B from PDB  Type:PROTEIN  Length:385
 aligned with Q3LSM4_AEDAE | Q3LSM4 from UniProtKB/TrEMBL  Length:393

    Alignment length:385
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380     
         Q3LSM4_AEDAE     1 MEYKVTPPAVLREPLVTPNKLLMGPGPSNAPQRVLDAMSRPILGHLHPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNLLEDGDVILIGHTGHWGDRSADMATRYGADVRVVKSKVGQSLSLDEIRDALLIHKPSVLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVASLGGAPMFMDRWEIDAMYTGSQKVLGAPPGITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDAGFELYADPKDRLSTVTTIKVPQGVDWLKAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQNATTERVDRVLQVFQEAVAAVKP 385
               SCOP domains d2huub_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains 2huuB01 B:1-30,B:280-385      2huuB02 B:31-279 Type I PLP-dependent aspartate aminotransferase-like (Major domain)                                                                                                                                                                     2huuB01 B:1-30,B:280-385 Aspartate Aminotransferase, domain 1                                              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhh.......ee........hhhhhhhh........hhhhhhhhhhhhhhhhhhhh....eeeee..hhhhhhhhhhhhhh....eeeeee.hhhhhhhhhhhhhh..eeeeee.......hhhhhhhhhhhhh..eeeee.ee....ee....hhhhhhhh...eeeee..................eee.............eeeeehhhhhhhhhh......hhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhh...eeeee.....hhhhhhhhhhhhhhee....hhhhh..eeeee.hhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2huu B   1 MEYKVTPPAVLREPLVTPNKLLMGPGPSNAPQRVLDAMSRPILGHLHPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNLLEDGDVILIGHTGHWGDRSADMATRYGADVRVVKSKVGQSLSLDEIRDALLIHKPSVLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVASLGGAPMFMDRWEIDAMYTGSQkVLGAPPGITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDAGFELYADPKDRLSTVTTIKVPQGVDWLKAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQNATTERVDRVLQVFQEAVAAVKP 385
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200     | 210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380     
                                                                                                                                                                                                                                       206-LLP

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: PLP-dependent transferase-like (627)

Superfamily: PLP-dependent transferases (625)

Family: automated matches (163)

Protein domain: automated matches (163)

Yellow fever mosquito (Aedes aegypti) [TaxId: 7159] (5)

1a	d2huua_	A:
1b	d2huub_	B:

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Aspartate Aminotransferase; domain 2 (384)

Homologous Superfamily: Type I PLP-dependent aspartate aminotransferase-like (Major domain) (384)

Yellow fever mosquito (Aedes aegypti) (5)

1a	2huuA02	A:31-279
1b	2huuB02	B:31-279

Architecture: Alpha-Beta Complex (3881)

Topology: Aspartate Aminotransferase, domain 1 (355)

Homologous Superfamily: Aspartate Aminotransferase, domain 1 (354)

Yellow fever mosquito (Aedes aegypti) (3)

2a	2huuA01	A:1-30,A:280-385
2b	2huuB01	B:1-30,B:280-385

(no "Pfam Domain" information available for 2HUU)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (Q3LSM4_AEDAE | Q3LSM4)


GO:0008453	alanine-glyoxylate transaminase activity	Catalysis of the reaction: L-alanine + glyoxylate = pyruvate + glycine.
GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0004760	serine-pyruvate transaminase activity	Catalysis of the reaction: L-serine + pyruvate = 3-hydroxypyruvate + L-alanine.
GO:0008483	transaminase activity	Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid.
GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Gly A:26 - Pro A:27	[ RasMol ]
		Gly B:26 - Pro B:27	[ RasMol ]

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	Q3LSM4_AEDAE \| Q3LSM4	:	2huf 2hui

2huf	CRYSTAL STRUCTURES OF AEDES AEGYPTI ALANINE GLYOXYLATE AMINOTRANSFERASE
2hui	CRYSTAL STRUCTURES OF AEDES AEGYPTI ALANINE GLYOXYLATE AMINOTRANSFERASE

Description

Compounds

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Ligands, Modified Residues, Ions (3, 4)

Sites (2, 2)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

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