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(-) Description

Title :  CRYSTAL STRUCTURE OF OXIDOREDUCTASE, GFO/IDH/MOCA FAMILY FROM STREPTOCOCCUS PNEUMONIAE
 
Authors :  C. Chang, C. Hatzos, J. Abdullah, A. Joachimiak, Midwest Center For Structural Genomics (Mcsg)
Date :  13 Jul 06  (Deposition) - 12 Sep 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.56
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Oxidoreductase, Gfo/Idh/Moca Family, Streptococcus Pneumoniae, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Chang, C. Hatzos, J. Abdullah, A. Joachimiak
Crystal Structure Of Oxidoreductase, Gfo/Idh/Moca Family From Streptococcus Pneumoniae
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - OXIDOREDUCTASE, GFO/IDH/MOCA FAMILY
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG
    Expression System Strain: BL21(DE3) DERIVATIVE
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: STREPTOCOCCUS PNEUMONIAE
    Organism Taxid: 1313

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 11)

Asymmetric/Biological Unit (1, 11)
No.NameCountTypeFull Name
1MSE11Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 2HO5)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2HO5)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ser A:152 -Lys A:153
2Lys B:153 -Mse B:154

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2HO5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2HO5)

(-) Exons   (0, 0)

(no "Exon" information available for 2HO5)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:305
 aligned with A0A0H2UR04_S | A0A0H2UR04 from UniProtKB/TrEMBL  Length:325

    Alignment length:323
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320   
         A0A0H2UR04_S     1 MLKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKLETAATFASRYQNIQLFDQLEVFFKSSFDLVYIASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTAEKNNCFIFEAARNYHEKAFTTIKNFLADKQVLGADFNYAKYSSKMPDLLAGQTPNVFSDRFAGGALMDLGIYPLYAAVRLFGKANDATYHAQQLDNSIDLNGDGILFYPDYQVHIKAGKNITSNLPCEIYTTDGTLTLNTIEHIRSAIFTDHQGNQVQLPIQQAPHTMTEEVAAFAHMIQQPDLNLYQTWLYDAGSVHELLYTMRQTAGIRFEA 323
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -2ho5A01 A:2-113 NAD(P)-binding Rossmann-like Domain                                                             --------------2ho5A02 A:128-323 Dihydrod                  ipicolinate Reductase; domain 2                                                                                                                          CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..hhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhh.....eee.hhhhhhhh...eeee..hhhhhhhhhhhhhhh..eeee......hhhhhhhhhhhhhhh...eee......hhhhhhhhhhhhh..eeeeeeeee.....------------------.hhhhhhhhhhhhhhhhh.....eeeeeeee.....eeeeeeeee....eeeeeee........eeeee..eeeee........eeeee....eee.........hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ho5 A   1 mLKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKLETAATFASRYQNIQLFDQLEVFFKSSFDLVYIASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTAEKNNCFIFEAARNYHEKAFTTIKNFLADKQVLGADFNYAKYSSK------------------GGALmDLGIYPLYAAVRLFGKANDATYHAQQLDNSIDLNGDGILFYPDYQVHIKAGKNITSNLPCEIYTTDGTLTLNTIEHIRSAIFTDHQGNQVQLPIQQAPHTmTEEVAAFAHmIQQPDLNLYQTWLYDAGSVHELLYTmRQTAGIRFEA 323
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150  |      -         - |   | 180       190       200       210       220       230       240       250       260       270      |280      |290       300       310  |    320   
                            |                                                                                                                                                     153                172   |                                                                                                  277-MSE   287-MSE                   313-MSE      
                            1-MSE                                                                                                                                                                        176-MSE                                                                                                                                               


Chain B from PDB  Type:PROTEIN  Length:305
 aligned with A0A0H2UR04_S | A0A0H2UR04 from UniProtKB/TrEMBL  Length:325

    Alignment length:322
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320  
         A0A0H2UR04_S     1 MLKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKLETAATFASRYQNIQLFDQLEVFFKSSFDLVYIASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTAEKNNCFIFEAARNYHEKAFTTIKNFLADKQVLGADFNYAKYSSKMPDLLAGQTPNVFSDRFAGGALMDLGIYPLYAAVRLFGKANDATYHAQQLDNSIDLNGDGILFYPDYQVHIKAGKNITSNLPCEIYTTDGTLTLNTIEHIRSAIFTDHQGNQVQLPIQQAPHTMTEEVAAFAHMIQQPDLNLYQTWLYDAGSVHELLYTMRQTAGIRFE 322
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -2ho5B01 B:2-113 NAD(P)-binding Rossmann-like Domain                                                             --------------2ho5B02 B:128-322 Dihydrodi                 picolinate Reductase; domain 2                                                                                                                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....hhhhhhhhhhhhhh..eeeeeee..hhhhhhh........eee.hhhhhhh....eeee..hhhhhhhhhhhhhhh..eeee......hhhhhhhhhhhhhhhh..eee..hhhhhhhhhhhhhhhh...eeeeeeeee......-----------------.hhhhhhhhhhhhhhhhh.....eeeeeeee.....eeeeeeeee....eeeeeee........eeeee..eeeee........eeeee....eee.........hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ho5 B   1 mLKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKLETAATFASRYQNIQLFDQLEVFFKSSFDLVYIASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTAEKNNCFIFEAARNYHEKAFTTIKNFLADKQVLGADFNYAKYSSKm-----------------GGALmDLGIYPLYAAVRLFGKANDATYHAQQLDNSIDLNGDGILFYPDYQVHIKAGKNITSNLPCEIYTTDGTLTLNTIEHIRSAIFTDHQGNQVQLPIQQAPHTmTEEVAAFAHmIQQPDLNLYQTWLYDAGSVHELLYTmRQTAGIRFE 322
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150   |     -         - |   | 180       190       200       210       220       230       240       250       260       270      |280      |290       300       310  |    320  
                            1-MSE                                                                                                                                                  154-MSE           172   |                                                                                                  277-MSE   287-MSE                   313-MSE     
                                                                                                                                                                                                         176-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2HO5)

(-) CATH Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2HO5)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2HO5)

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  Cis Peptide Bonds
    Lys B:153 - Mse B:154   [ RasMol ]  
    Ser A:152 - Lys A:153   [ RasMol ]  
 

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 Related Entries

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UniProtKB/TrEMBL
        A0A0H2UR04_S | A0A0H2UR04: 4iq0 4nhe

(-) Related Entries Specified in the PDB File

2ho3